Moritella yayanosii: MORIYA_0883
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Entry
MORIYA_0883 CDS
T05564
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mya
Moritella yayanosii
Pathway
mya03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mya00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MORIYA_0883 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mya03400
]
MORIYA_0883 (mfd)
Enzymes [BR:
mya01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MORIYA_0883 (mfd)
DNA repair and recombination proteins [BR:
mya03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MORIYA_0883 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
SQD77361
UniProt:
A0A330LN02
LinkDB
All DBs
Position
MORIYA:928109..931585
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AA seq
1158 aa
AA seq
DB search
MKSTAILSLPLPKKQGDKIAYGNLVGSSLAFTLAELCSQTKSPILAVVADTPSALKLEQE
VRHFLADDKPLITFPDWETLPYDNFSPHQDIISQRIHALHRFQQTTSGLIIVSVNTLMQR
IAPVSFLAQHSLIVKTGDKIDMHAMRQRLETSGYNAVDQVLEHGEFSARGSILDLYPMGS
SSPFRIDFFDDEVEEIRGFNTETQRSEEILDAINLLPAHEFPTDAKAIALFRQQFRALFT
PSREAESIYQQVSKGFLPAGIEYYHPLFLTETATLFDYLPKQLTIAQVGELHQASEVFFQ
DVEQRYEDRRHDIQRPLLTPSSLYLPVSELFQALGQYSKVSLSSEFLNKKAGNTNLGFSK
LPEIAINHQKKAPLAPLLEFIEGFDGKIIFSVESEGRRETLLELLAKTKLKPKAMTSIAK
FLKAKPVIGIWVSQCEHSFIIDDLNVAIICENELLGHKIIQRRRSDKKVQANNDALVRNL
TELSIGQPVVHIEHGVGRYLGLQIITNAGMETEFLTLEYANAAKLYVPVSALHLISRYSG
AGETSAPLHKLGSDSWVKSKTKAMERVRDVAAELLDIYAQRAAKSGFQYKCDKESYAAFA
DGFPFEETDDQKTAIQDVMDDMRQNKTMDRLICGDVGFGKTEVAMRAAFMAMMNDKQVAV
LVPTTLLAQQHFENFKDRFANWPVRVEVLSRFKTAKEQKLILADVKNGKIDLLIGTHKLL
SNKIEYSDLGLLVIDEEHRFGVRQKEKVKALRADIDILTLTATPIPRTLNMAMNGMRDLS
IIATPPAKRLAVKTFVRQYDENIVKEAIMREIMRGGQVYFLHNNVDSIDKTVETLAKLIP
EARIVAAHGQMAERQLESVMADFYHQRFNVLVCTTIIETGIDIPSANTIIMDRADNLGLA
QLHQLRGRVGRSHHQAYAYLLTPHPKRISSDAKKRLEAIVSLEDLGAGFTLATHDLEIRG
AGELLGDEQSGQITSVGFALYMDMLDQAVKSIKQGKSVSLEEALKNQTEIELHVPALLPD
DYIHDVNIRLSLYKRIASCQTEEQLREVQVELIDRFGLLPDNAKNLIRQTELKLQAEPLG
IKRLEIGPAGGYISFGDDNQVDVGYLIRLIQQQPRVYSMDGPSKLKFAIKSPDAKDRVKL
VEAMLVEFAKNKIAGVKR
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcaacagctattctttctttaccgttaccaaaaaaacaaggcgacaagatcgcc
tatggtaaccttgtaggcagtagcctcgcattcacacttgccgagctatgttcacaaacc
aaatcgcctatccttgcggttgttgcagacactccaagtgcattaaagcttgagcaagaa
gtacggcactttttagccgacgacaaaccgctaattaccttccctgattgggaaacactg
ccgtatgataacttctcgccacatcaagatattatctcgcaacgtattcatgctttgcac
cgcttccaacaaaccaccagcggcttgattattgtatcggtaaataccttgatgcaacgt
atcgcgccagtcagttttttagcccagcatagcttaatcgtcaaaacaggcgataaaatt
gacatgcacgcgatgcgccaacggttagaaaccagtggttacaatgccgttgaccaagta
ctagaacatggtgaattttctgcacgcggatctattcttgacctgtatccgatgggcagt
tcatcgccgtttcgaatcgacttttttgatgatgaagtagaagaaattcgtgggtttaat
accgagacacaacgctcggaagagatccttgacgcgataaacttattacccgctcacgaa
ttcccaacagatgctaaagcgatagcgttattccgtcagcagtttagagcattgttcaca
ccatcgcgtgaagctgaatccatttatcagcaagtcagcaaaggcttcttacctgcaggt
attgagtactatcacccgttattcttaactgaaactgccacgttatttgattatttacct
aaacaactgactattgcgcaagtcggtgaattacatcaagcatccgaagtgttcttccaa
gacgttgaacaacgttacgaagatcgccgccatgatattcaacgtccattactgacacca
agttcactgtacttacctgtttcagaattattccaagcacttggccagtatagtaaagta
agtttaagcagtgaatttctgaataaaaaagcaggtaataccaacctaggctttagcaag
ttacctgaaatagccattaaccatcagaaaaaagcaccgttagcacctttgctagaattt
atcgaagggtttgacggtaaaataatcttcagtgttgaatctgaaggtcgccgtgaaaca
ctattagagctacttgcaaaaaccaagttaaagcctaaggcaatgaccagtatcgccaag
tttttgaaagctaaaccagtgatcggtatttgggttagtcagtgtgaacacagctttatt
attgacgatctaaatgtggcgattatttgcgagaacgaattgcttggacacaagatcatc
cagcgtcgccgctccgataaaaaagtacaagcaaataacgatgcgctagtcagaaaccta
acagaattaagtatcggtcaaccggttgtacatatcgaacacggtgtcggccgttatctt
ggtctacagatcattactaatgccggcatggaaactgagtttttaacgttagaatacgcc
aatgcggcaaagctctatgttcccgtttcagcactgcaccttatcagtcgttatagcggt
gcaggcgaaacatcggcaccactgcataaactcggcagtgatagctgggtaaaatccaaa
accaaagcaatggagcgtgttcgagacgttgctgcagaattattagatatctacgcacag
cgagcggctaaaagcggttttcaatataaatgcgataaagaatcgtatgcagcctttgcc
gatggtttcccgtttgaagaaactgacgatcagaaaactgcaattcaagacgtcatggac
gatatgcgtcaaaataaaaccatggatcgtctgatttgtggtgatgtaggctttggtaaa
acggaggtagcaatgcgcgccgctttcatggcaatgatgaacgacaaacaagtcgccgtg
ttggtaccgaccaccttacttgctcagcaacatttcgaaaacttcaaagatcgttttgct
aactggccggtacgtgttgaagtgctctctcgctttaaaacagcgaaagagcagaagttg
attttagctgacgtcaaaaacggtaaaattgatttactcatcggcacacataaattgctc
agtaacaagattgaatattctgatctcggtttattggtcatcgatgaagaacatcgcttt
ggggtacgccaaaaagaaaaagtaaaagcgttgcgtgcggacattgatattttaacctta
acagcaacaccaattccaagaacattgaacatggcaatgaatggcatgcgtgatttatct
atcatcgccacaccacccgcgaaacgtttagcggtgaaaacatttgttcgccaatacgac
gaaaatatcgtaaaagaagcgatcatgcgtgaaataatgcgtggtggccaagtttacttc
ttgcataacaatgtcgactcaatagacaaaaccgtagaaacactcgcaaaactgataccg
gaggcgcgcattgttgcagcccacggacaaatggcagaacgtcaattagaatcggttatg
gcagatttctatcatcagcgcttcaatgttttagtctgtacgaccattattgaaaccggt
atcgatattccaagcgcgaacaccatcattatggatcgcgcagataatctcggtttagca
caacttcatcaattacgtggtcgtgttggtcgttctcatcaccaagcctacgcatacctg
ctaacaccgcatccgaagcgtatctccagcgacgctaaaaaacgtcttgaagcaattgtc
tcactagaagacctcggggcaggttttaccttggcaacgcacgatcttgagatccgtggt
gccggtgaactattaggtgatgaacaaagtggtcaaataacctcagttggtttcgcgctg
tatatggacatgctcgatcaagcagtgaaaagtatcaaacaaggaaaatcagtttcactt
gaagaagcccttaaaaatcaaaccgaaattgaactgcatgtgcccgcgttattgccagat
gattacattcatgacgttaatatacgtttatcactgtataaacgtatcgcaagttgtcaa
actgaagagcagttacgtgaggtgcaagttgaactcattgaccgttttggtttattgccc
gacaatgctaaaaacttaatccgtcaaaccgagttaaaattgcaagcagaacctttaggt
attaaacgacttgaaataggtcccgcaggtggctatattagcttcggcgatgataatcag
gttgatgtcggttatcttatccgtcttatccaacaacagccacgtgtttatagtatggat
ggtccatcaaaattaaagtttgcaatcaaatcaccggatgcaaaagatcgagttaagcta
gttgaagcaatgctagttgaatttgcaaaaaataaaattgcaggagttaaacgttga
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