Myotis brandtii (Brandt's bat): 102245319
Help
Entry
102245319 CDS
T02920
Symbol
SNRNP200
Name
(RefSeq) small nuclear ribonucleoprotein U5 subunit 200
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
myb
Myotis brandtii (Brandt's bat)
Pathway
myb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
myb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102245319 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
myb03041
]
102245319 (SNRNP200)
Enzymes [BR:
myb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102245319 (SNRNP200)
Spliceosome [BR:
myb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
102245319 (SNRNP200)
Complex C
U5 SnRNP specific factors
102245319 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Motif
Other DBs
NCBI-GeneID:
102245319
NCBI-ProteinID:
XP_005868428
LinkDB
All DBs
Position
Un
AA seq
2029 aa
AA seq
DB search
SAFSPSHCVSVRRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKNTREIYEVLLS
FIQAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKK
ITDYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRC
TLSANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASD
DRECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSK
FLYQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQ
GSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGF
KTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINPDGTINVDNFKI
IYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLHKEEISATQIIVCTPEKWDIITR
KGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEEVRLIGLSATLPNY
EDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGK
NQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLL
PYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEK
GRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLP
DMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVH
TAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEAELFRVF
SLSSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALM
ADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEE
VVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTL
KVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPV
FEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFE
SLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVY
ITPMEALAEQVYMDWYKKFQDRLSKKVVLLTGKTSTDLKLLGKGNIIISTPEKWDILSRR
WKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAK
DVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKP
VIVFVPSRKQTRLTAVDVLSTCAADIQRQRFLHCTEKDLIPYLEKLSNNTLRETLLNGVG
YLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMSVAAHLVIIMDTQYYNGKIHAYVD
YPIYDVLQMVGRANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNA
EIVTKTMENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQ
SKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENI
PIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSK
AIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWPKDPYLKQLPHFTSEHIKRCTDKG
VESVFDIMEMEDEERNALLQLSDGQMADVARFCNRYPNIELSYEVVDKDGIRSGGPVVVL
VQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLMQQKD
NT seq
6089 nt
NT seq
+upstream
nt +downstream
nt
gttctgccttttcaccatcacactgtgtgtccgttaggcgaagaaagcgtgacgaggacc
ggcacgacatcaacaagatgaaggggtacactctgctctcggagggcatcgatgagatgg
tgggcatcatctataagcccaaaaccaaaaacacccgggagatttacgaagtgctgctca
gcttcatccaggctgcccttggggaccagccacgtgatattctttgtggggcagctgatg
aagttctagctgtcctaaagaatgaaaagcttcgtgacaaggaaaggagaaaggagattg
acctgttgctggggcagacagatgataccagataccatgtgctggtgaacttgggcaaga
agatcacagactatggcggagacaaggaaatccagaatatggatgacaacattgatgaga
cctatggtgtgaatgtacagtttgagtctgatgaggaggaaggtgatgaagatgtgtacg
gggaggttcgagaagaggcgtccgatgatgacatggaaggggatgaggctgtggtgcgct
gcaccctctcagctaatcttgtagcctctggtgaactgatgagttctaagaagaaggatt
tgcaccctcgggacattgatgcattttggctgcagcggcagctcagtcgcttctatgatg
atgccattgtatcgcagaagaaggcagacgaagtgttggaaatcttaaagacggccagtg
atgaccgggagtgtgagaaccagctggtgctcctgctcggtttcaatactttcgatttta
ttaaagtgctgcggcagcacaggatgatgattttatattgcaccttgctggccagtgcac
agagtgaagctgaaaaggaaaggatcatgggaaagatggaagctgatccagagttatcta
agttcctctaccaacttcacgagacggagaaggaggatctgatccgggaggagcggtccc
ggagggagcgcgtgcggcagtcccgcatggacactgatctggaaaccatggatctggacc
agggcggggaggcattggctccgaggcaggttctggacttggaggacctggtttttaccc
aagggagccacttcatggccaacaaacgctgtcagcttccggatgggtccttccggcgcc
agcgcaaaggctacgaagaggtgcacgtacctgctctgaagcccaagcccttcggctccg
aggaacaactgcttccggtggagaagctgcccaagtacgcccaggctggattcgagggct
tcaagacgctgaaccggatccagagtaagctctaccgggccgccctggagacagatgaga
acctgctactgtgtgcccccactggcgccgggaagaccaacgtggccctgatgtgcatgc
tccgcgagatcgggaagcacattaacccggacggcactatcaacgtggacaacttcaaga
tcatctacatcgccccgatgcgctccctggtgcaggagatggtgggcagctttgggaagc
gcctggccacatacggcattactgttgcagaactgactggcgaccaccagctgcacaagg
aggagatcagtgccactcagatcattgtctgcacccctgagaagtgggacatcattaccc
gcaagggtggggagcgtacctacacccagcttgtgcggctcatcattctggatgagatcc
acctcctccatgatgacagaggtcctgtcttggaagctttggtggccagggccatccgaa
acattgagatgacccaagaggaagtcagactcattgggctgagcgccaccctccccaact
acgaagatgtggccacatttctgcgtgttgatcctgccaagggcctcttctactttgaca
atagcttccgcccagtgcctctggaacagacctacgtaggcatcacagagaaaaaagcta
tcaagcgtttccagatcatgaatgaaatagtctacgagaagatcatggaacatgcgggga
aaaatcaggtgctggtgtttgtccactcccggaaggagactgggaagacggccagggcca
ttcgggacatgtgcctggagaaggacactctgggtctgtttctgagagagggctccgcct
ccacagaagttcttcggaccgaggcagagcagtgcaagaacctggagctgaaggatctgc
tgccctatggctttgctattcatcatgcgggcatgaccagagtggacaggacactcgtag
aggatctttttgctgataaacacattcaggttttagtttccacagcaactctggcttggg
gtgtgaatctccccgcacatacagtcatcatcaaaggtacccaggtgtatagtccagaga
aggggcgctggacagagctgggagcactggacattctgcagatgctgggacgagccggaa
gaccgcagtatgacaccaagggcgaaggcatcctcatcacatcgcatggggagcttcagt
actacctgtccctcctcaaccagcagcttcctattgagagccagatggtgtcaaagctgc
ctgacatgctcaacgcggaaatcgtgctgggaaatgtccagaatgcaaaggatgcagtga
actggctgggctatgcctacctgtatatccgaatgctccggtccccaaccctctacggca
tctctcatgacgacctcaagggagaccccctgctggaccagcgccggctggacctggtgc
atactgctgccttgatgctggataagaacaacctggtcaagtatgataagaagacaggca
acttccaggtgacagaactgggccgtatagccagccactactacatcaccaacgacacag
tgcagacctacaaccagctgctgaagcccactctgagcgaggctgagctcttcagagtct
tctcattgtcctcagagttcaagaacatcactgtgagagaggaggagaagctggaactgc
agaagctgctggagagggtgcccattcccgtaaaggagagcattgaggaacccagcgcga
agatcaacgtgcttctccaagccttcatctcacagctgaaactggagggctttgcactga
tggctgacatggtgtatgtcacacagtcggcgggccggttgatgcgggccatctttgaaa
ttgtcctgaaccgcggttgggcacagcttacagacaagaccctgaatctctgcaagatga
tcgataaacgcatgtggcagtccatgtgtccgctgcgtcagttccgcaaactccctgagg
aagtagtgaagaagattgagaagaaaaacttcccctttgagcgtctgtatgacctgaatc
ataatgagataggggagctcatccgcatgccgaagatgggcaagaccatccacaaatacg
tccacctgttccccaagttggagctgtcggtgcacctgcaacccatcacgcgctccaccc
tgaaggtggagctgaccatcacgccagacttccagtgggatgaaaaggtccatggttcgt
ctgaggcattctggattctggtggaggatgtggacagtgaggtgatactgcaccatgagt
attttctactcaaggccaagtatgcccaggatgagcacctcattacgttctttgtgcctg
tctttgaaccactgccccctcagtacttcatccgcgtggtgtctgaccgctggctctctt
gtgagacccagcttccggtctctttccgacacctgatcctgccagagaaatacccacctc
ccactgaacttctggacctgcagcccttgcccgtgtctgccttgagaaacagcgccttcg
agagcctttaccaagataaatttcctttcttcaaccccatccagacccaagtgtttaaca
cagtgtacaacagtgatgacaacgtgtttgtgggagcacccaccggcagcgggaagacca
tctgtgcggagttcgccatcctgcgcatgctgctgcagagctcggaggggcgctgtgtct
acatcacccccatggaggcgctggcagagcaggtgtacatggactggtacaagaagttcc
aggaccggctcagcaagaaggtggtgcttctgacgggcaagaccagcacagacctcaagc
ttctgggcaaaggcaacatcatcatcagtacccctgagaagtgggacatcctctctcggc
gctggaagcagcgcaagaacgtccagaacatcaacctctttgtggtggacgaggtccacc
tcattgggggcgagaatgggcctgttttggaagtgatctgctcccggatgcgctatatct
cctcccagattgagcggcccattcgcattgtggcacttagctcctcgctctcaaatgcta
aggatgtggcccactggctggggtgcagtgccacgtccactttcaacttccacccgaatg
tgcgccctgtgcccttggagctgcacatccagggctttaacatcagccacacacagactc
gcctgctgtccatggccaagcccgtgtaccatgcaatcaccaagcactcgcccaagaagc
ctgtcatcgtttttgtgccgtcccgcaagcagacccgcctcactgcagtcgacgtcctca
gcacgtgtgcagcggacatccagcggcagaggttcttgcactgcaccgagaaggacctga
tcccgtacctggagaagctgagcaacaacacgctcagggagacgctgttgaatggtgtgg
gttacctacacgaggggctcagccccatggagcggcgcctggtggagcagctcttcagct
caggggccatccaggtggtggtcgcttctcggagtctctgctggggcatgagcgtggccg
cccacctggtgatcatcatggacacccagtactacaatggcaagattcacgcgtacgtgg
actaccccatctatgacgtgcttcagatggtggggcgtgccaaccgacctctgcaggatg
acgaggggcgctgtgtcatcatgtgtcagggctccaaaaaggatttcttcaagaagttct
tatacgagcccttgccagtggagtctcacctggaccattgcatgcatgaccacttcaacg
ctgagattgtcaccaagaccatggagaacaagcaggacgccgtggactacctcacctgga
cctttctgtaccgccgcatgacacagaaccccaactactacaacctgcagggcatctccc
accgccacctgtctgaccacttgtcagagctggtggagcagaccctgagtgacctggagc
agtccaagtgcatcagcatagaggacgagatggacgtggcacctctgaacctgggcatga
tcgccgcctactattacatcaactacacaaccatagagctcttcagcatgtccctaaatg
ccaagaccaaggtgcgggggctcatcgagatcatctccaatgcggctgagtacgagaaca
ttcccatccggcaccatgaggacaacctcctgcggcagttggctcagaaggtcccgcaca
agctgaacaaccctaagtttaatgacccacatgtcaagaccaacctgctcctgcaggctc
acctgtcccgcatgcagctgagtgctgagctgcagtcggataccgaggagatccttagca
aggcgatccggctcatccaggcctgtgtggatgtcctctccagcaatgggtggctgagtc
ctgctctggcagccatggaactggcccagatggtcacccaagccatgtggcccaaggacc
catacctgaagcagctgccacacttcacctcagagcacatcaaacgctgcacagacaagg
gagtggagagtgttttcgacatcatggagatggaggatgaagagcgaaatgcactgcttc
agctgtctgacggccagatggcagatgtggcccgcttctgcaaccgctaccctaatattg
agctctcttacgaggtggtggataaggacggcatccgcagtggcgggcccgttgtggtgc
tggtacagctggagcgagaggaggaagtcacaggtcccgtgattgcacctctcttcccac
agaaacgtgaagagggctggtgggtggtgatcggagatgccaagtccaatagcctcatct
ccatcaagaggctgatgcagcagaaggat
DBGET
integrated database retrieval system
