Myotis brandtii (Brandt's bat): 102249384
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Entry
102249384 CDS
T02920
Symbol
DDX39B
Name
(RefSeq) DExD-box helicase 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
myb
Myotis brandtii (Brandt's bat)
Pathway
myb03013
Nucleocytoplasmic transport
myb03015
mRNA surveillance pathway
myb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
myb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102249384 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
102249384 (DDX39B)
03015 mRNA surveillance pathway
102249384 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
myb03019
]
102249384 (DDX39B)
03041 Spliceosome [BR:
myb03041
]
102249384 (DDX39B)
Enzymes [BR:
myb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102249384 (DDX39B)
Messenger RNA biogenesis [BR:
myb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
102249384 (DDX39B)
Spliceosome [BR:
myb03041
]
Complex C
Other components
EJC/TREX
102249384 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
102249384 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
102249384
NCBI-ProteinID:
XP_005859958
LinkDB
All DBs
Position
Un
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaacgatgtggacaacgagctcttggactatgaagatgacgaggtggagacc
gcagctgggggagacggggctgaggcccccgccaagaaggatgtgaagggctcctacgtc
tccatccatagctctggctttcgggacttcctgctcaagccagagttgctccgagccatt
gttgactgtggctttgagcatccatcagaagttcagcatgagtgcatccctcaggccatt
ctgggaatggacgtcttatgccaggccaagtcaggcatgggaaagacggcagtgtttgtg
ctggccacactgcagcagctggagccagttactgggcaggtgtctgtgctggtgatgtgt
cacacccgggagctggcttttcagatcagcaaggagtatgagcgcttctctaagtacatg
cccaatgtcaaggtggcagtgttttttggaggtctgtccatcaagaaggatgaagaggtg
ctgaagaagaactgcccgcatatcgtcgtggggacccctggccgcatcctagccttagct
cgaaataagagcctcaacctcaaacacattaaacactttatcttggatgaatgtgataag
atgcttgaacaactcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccac
gagaagcaggtcatgatgttcagtgccaccttgagcaaagagatccgccccgtctgccgc
aagttcatgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcac
gggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttttggatgtccttgagttcaaccaggtggtgatctttgtgaagtctgtgcagcgctgc
atcgccctggcccagctcctggtggagcagaacttcccagccatcgccatccaccgaggg
atgccccaggaggagaggctttctcggtatcagcaatttaaagattttcaacgacgaatt
cttgtggctaccaacctgtttggccgaggcatggacatcgagagggtgaacattgccttt
aattatgacatgcctgaggactccgacacctacctgcatcgggtggccagagcaggccgg
tttggtaccaagggtttggccatcacgtttgtgtcagatgagaatgatgccaagatcctc
aatgatgtgcaggatcgctttgaggtcaatattagtgagctgcctgatgagatagacatc
tcctcctacattgaacagacacgatag
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