Mycoavidus sp. B2-EB: MPB2EB_0223
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Entry
MPB2EB_0223 CDS
T09873
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
myco
Mycoavidus sp. B2-EB
Pathway
myco03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
myco00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MPB2EB_0223 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
myco03021
]
MPB2EB_0223 (rpoC)
03400 DNA repair and recombination proteins [BR:
myco03400
]
MPB2EB_0223 (rpoC)
Enzymes [BR:
myco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MPB2EB_0223 (rpoC)
Transcription machinery [BR:
myco03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MPB2EB_0223 (rpoC)
DNA repair and recombination proteins [BR:
myco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MPB2EB_0223 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
BBO59118
LinkDB
All DBs
Position
254323..258537
Genome browser
AA seq
1404 aa
AA seq
DB search
MKALLDLFKQVQQNEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRERMAHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVIEAGMTPLKRGQIMTEEDYYSKVEEYGDEFRAEM
GAEGVRELLRSIDIDAQAETLRSELKVTGSEAKLKKFSKRLKVLEAFQRSGIKPEWMIFE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSVADMLKGKGGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFHKLEVMGIATTIKAAKKEVESQTPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMLASNNILFPANGEPSIVPSQDIVLGLYYATRERINGKGEGMIFSNVSEAVRAYENH
QVELSARVQVRIAEQLPKPNTPVGSREFEPKLTLYRTTVGRAILSEILPAGLSFSVMNKP
LKKREISRLINMAFCRCGLRETVIFADQLMQQGFKLATRAGISICVDDMLVPPQKEKIVN
DSAQKVKEYDRQYMSGLVTAQERYNNVVDIWSATSEAVGKAMMEQLSTEDVIDREGKTVK
QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTVNGVAMKALVEGGEVVEAL
RDRILGRVTIADVVNSETQETVYENGTLLDEMAVEEIERLGIDEVRVRTPLNCETRYGLC
ARCYGRDLGRGVLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSIEAKSN
GIVRFTAAMRYVMNAKGEAIAISRSGEVIITDDHGRERERHKVPYGATLLQTDGAQIKAG
AQLALWDPLTRPIIAEYGGTARFENVEEGVTVARQIDDVTGLSTLVVIDPKRRGSQASKS
VRPQVKLLDAQGAEVKIPGTDHAVMIGFQVGALITVKDGQAVQVGEVLARIPTESQKTRD
ITGGLPRVAELFEARSPKDAGVLAEVTGTVSFGKDTKGKQRLVITDLDGNQNEFLIPKDK
QVLVHDGQVVNKGEMIVDGPADPHDILRLQGVEALAGYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVHITDAGETRFIPGEQVERSDMLNENDQMEADDKRPASYDNILLGITKASL
STDSFISAASFQETTRVLTEAAIMGKRDDLSGLKENVIIGRLIPAGTGLAFHKARKNKEA
SDRKRFDQIAEAESEAFGFGPPVV
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctttgctcgatctattcaagcaagttcagcaaaatgaagtatttgatgcaatt
aagattggtctagcctcgccagacaaaatccgttcttggtcgtttggtgaagtcaaaaaa
cctgaaacgatcaactatcgcacctttaagccggaacgcgatggtttgttctgcgctaag
atttttgggccgatcaaagattatgagtgcttgtgcggtaaatataagcgtcttaaacac
cgcggcgtaatttgcgagaaatgcggggttgaagtcacgttgaccaaagtgcgtcgtgag
cgtatggcgcatattgagcttgcctcgccggttgcgcatatttggttcttaaaatcacta
ccgtcgcggttgggcatggtgctcgatatgaccttacgtgatattgagcgtgtgctttat
tttgaagcctatgtggtgattgaagctggtatgaccccgttaaagcggggccagatcatg
actgaggaagactattacagcaaagtcgaagaatacggcgatgagtttcgtgctgaaatg
ggcgcggaaggtgtgcgcgagttattgcgctcaatcgatattgatgcccaagctgaaacc
ttgcggagtgaattaaaagtcactggctcagaggcgaaattaaagaaattttctaagcgc
ttgaaagtattagaagcttttcagcgttctgggattaagcctgaatggatgatcttcgaa
gttttgccagtgttacctcccgagttgcggccattagtgccgctcgatggcggccgcttt
gcgacttcagatttgaatgatttgtaccgtcgcgtgattaaccgcaacaatcggttaaaa
cgcttgcttgaactcaaagcgcctgaaattatcgtgcgcaatgaaaaacgcatgttgcaa
gaggcggtcgattcactgcttgacaatggtcgccgcggtaaagcgatgaccggcgccaat
aaacgccccctgaaatcggtggcggatatgctcaagggtaaaggcggacgtttccgtcag
aacttattgggtaagcgcgtcgattactctggccgctcggtgattgtggtggggcctacc
ctcaaactgcatcaatgtggtttgccaaaattgatggcgctcgagttattcaaacctttc
atctttcataaacttgaagtgatggggattgcgaccacaattaaggccgctaaaaaagaa
gttgagagccaaacgcccgtggtttgggatattctcgaagaagtgattcgtgaacatcca
gtgatgttaaaccgtgcgccaacgctgcatcgtcttgggattcaggcattcgagccggtc
ttgattgaaggtaaagcgatccagctgcatccactggtatgcgcggcatttaatgctgac
ttcgatggtgaccaaatggcggtgcatgtgccgctttcgctcgaagcgcagcttgaagcg
cggacgttaatgttggcctcaaataacatcttattcccggccaacggtgaaccctcgatt
gtgccttcgcaagatattgtgctcggcctttattatgcgacgcgtgagcgtatcaatggc
aaaggcgaaggtatgatcttctctaatgtcagcgaagcggttcgtgcttatgagaaccac
caggtcgaattgagtgcgcgcgttcaggtgcggatcgccgaacagttacctaaacccaat
acgccagttggctcacgagagttcgagcccaagttgacgctctatagaactacggtgggt
cgagctatcttgtcggaaattctgccagccggcttatcattttcagtcatgaataagcct
ctcaaaaagagagaaatctcgcgtttgatcaatatggcattttgtcgctgtgggttacgg
gaaactgtaatcttcgccgatcaattgatgcagcagggtttcaaacttgcgacgcgggcg
gggatttccatttgcgtcgatgacatgttggtaccgccgcaaaaagaaaagatcgttaac
gattcggcgcaaaaagtcaaagaatatgaccgacaatatatgtctggtctagtgactgcg
caagaacgctataacaacgttgtagatatctggtctgctacttcagaagcggtaggcaag
gcgatgatggaacagctttccactgaagatgtgattgatcgagaaggcaaaaccgtcaag
caagagtcgttcaattcgatttatatgatggcggattctggggcacggggttcggctgtg
caaattcgccagctggcggggatgcgcggtttgatggcgaaaccagatggctcgatcatc
gagacgccgattacggcgaatttccgtgaagggctgaatgtgttgcagtacttcatttca
acccacggcgcgcgtaaaggtctagcggatactgcgttgaagacggcgaattcagggtat
ctgacgcgtcgcctggtcgatgtgacgcaagatctggtggtggttgaagatgactgcgga
acggtcaacggtgtcgcaatgaaggcgctggtcgaaggcggggaagttgtagaggcgcta
cgtgaccggattcttgggcgtgtaacgattgccgatgtagtgaattcagaaacccaagaa
accgtttatgaaaacggcactctgctggatgaaatggcggttgaagaaattgagcgtttg
gggattgatgaagttcgggtgcgtaccccgcttaattgcgaaacccgctatggtttatgt
gcgcgctgctatggccgcgacttgggtcgtggcgtcttggtaaacgttggtgaggccgtt
ggtgtgattgcggcgcagtcgattggtgaaccaggcacgcagctcacgatgcggactttc
catattgggggcgcggcatcgcgtgcggcagttgcttcaagcatagaagctaaatcgaat
ggtatcgtgcgtttcaccgcagcaatgcgctacgtgatgaacgcaaaaggtgaggcgatt
gctatttcacgttcaggcgaagtgatcattacggatgatcatggtcgtgagcgtgagcgt
cataaagtgccttacggcgctacgttgttgcaaacggatggggcgcagatcaaagctggc
gcgcaattggcgctatgggatccactcacgcgcccgatcatcgctgaatatggcggtacg
gcgagatttgaaaacgtcgaagagggcgtgacggttgcacgccagattgatgatgtaacg
ggtttatcgacgctggttgtaatcgatccaaagcggcgtggttcacaagcctctaagagc
gtgcgtccgcaagtcaaattgctggatgcacaaggcgccgaagtcaaaatcccaggaact
gaccatgcggtaatgattggtttccaagtgggcgctttgattacggttaaagatgggcaa
gcggtgcaagtgggtgaggtgttagcgcggatcccaaccgaatcgcagaaaactcgagat
attactgggggtctgccgcgtgtagctgaattgtttgaagcgcgttcgccgaaagatgcc
ggtgttttggcggaagtgacgggtacggtttccttcggtaaagacactaaaggtaagcag
cgtctagtgattaccgacctggatggcaatcaaaacgaattcctgattccgaaagataaa
caggtattggtgcatgatggccaagttgtaaataaaggcgagatgattgtcgacggtcca
gctgaccctcatgatattttgcgtttacagggtgttgaagcgctagcaggctacatcgtt
gatgaagtgcaagatgtgtatcgtctacagggcgtgaagatcaacgacaagcatattgaa
gtgatcgtgcgccagatgttgcgtcgagtgcacattacggatgctggcgagacacgcttt
attccaggcgaacaggttgagcgctccgatatgctgaacgaaaatgatcagatggaagcc
gacgataagcgccctgcgagttacgataatatcttactgggtattacgaaagcatcgttg
tcgacggattctttcatctcggctgcgtcgttccaagaaacaacccgcgtcctaaccgaa
gcggccatcatgggcaaacgcgacgacctgagtggtctgaaagaaaacgtgattatcggc
cgtttaatcccggccggtacaggtctggcttttcataaggcacgtaaaaataaagaagcc
tctgatcgcaaacgattcgaccaaatagctgaggctgaatctgaagcatttgggtttggg
ccaccggttgtttaa
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