Mycoavidus sp. B2-EB: MPB2EB_0486
Help
Entry
MPB2EB_0486 CDS
T09873
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
myco
Mycoavidus sp. B2-EB
Pathway
myco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
myco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MPB2EB_0486 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
myco03019
]
MPB2EB_0486 (rne)
03009 Ribosome biogenesis [BR:
myco03009
]
MPB2EB_0486 (rne)
Enzymes [BR:
myco01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MPB2EB_0486 (rne)
Messenger RNA biogenesis [BR:
myco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MPB2EB_0486 (rne)
Ribosome biogenesis [BR:
myco03009
]
Prokaryotic type
rRNA processing factors
MPB2EB_0486 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
BBO59370
LinkDB
All DBs
Position
complement(538547..541243)
Genome browser
AA seq
898 aa
AA seq
DB search
MKRILFNATQREELRVAIVVGQKLIDIDIETIGQEQRKGNIYKGVVTRIEPSLEACFVNY
GEERHGFLPFKEVARQYFKEGIDMRSARIQDVLREGQELIIQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRDTMAQLQLPDGMSMIARTAGISRSIEELQ
WDLNYLMQLWRAIEEAANDMQGPLLIYLESSLVIRAIRDYFQPDIGEILIDTAEIEEQAR
AFMGIVMPDSLHKVKRYHDDVPLFSRFQIEHQIETAYARTVSLPSGGSVVIDHTEALVSV
DVNSARATKGADIEETALRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKNQREVEQR
LKDALKHDRARVQMSKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRNAESSALQ
ILRIIQEEAMKENTASIHCQVPIEVATFLLNEKRQEINKIESRFKVGIILIPNKYLETPH
YKLERLRHDDPHIDEIHISHRMAEKAVREMELEMAYSKRTEEIRPKQEAAVKGISPEQPA
PIAKRSKLSRTASAHRLETENSGLFSWFKRWFSFSPAELSTTPEKTPSQRTRPAQATTER
AADKSVAQERNNNNGRTRRGSNASRTGEPNNERAARNGGKRRDARTPAEEPVEMLEPATP
TQEPSERQERGRRPERSGRQDHRRAPTPTPAPNQTVAAAPDVPRTDRSDEFLVASAGHPD
PASTAQPEGEERRRRRRGRRGGRRERDDANQPRSRSAEFSTEFTQSTDSAPRLPEQAQLQ
PPAPPQPASVNVSPAGTAIPNPPALAATPAAQPASSLAPAPANLPEPKMTPRPAALDRML
ETTHLVLVNTDSDKLHRAHEATALITEPPRVRRERKRLPQAESTPIQQVETAKMAETK
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatactttttaacgccacgcaacgagaagaacttcgtgtggccatcgtggtt
gggcaaaagctcattgatattgatattgaaaccattgggcaagaacaacgcaaaggcaat
atttataaaggagtcgtcacccgtattgagccctcgctagaagcgtgctttgtcaattac
ggcgaagaacgccatggttttttaccctttaaggaagtcgcgcgccaatatttcaaagaa
gggatcgacatgcgctcggcgcggatccaagatgtgctgcgtgaagggcaagagctgatc
attcaggttgaaaaagaagaacgcggcaataaaggcgcggcgctgacgacctttatctcg
ctcgctggacgttatttggtgctcatgccgaataatccgcggggcggcggtgtctcgcgc
cgcatcgaaggcgatgaacgccaagaactgcgtgatacgatggcgcaactgcaattacca
gacggcatgagcatgatcgctcgcaccgcagggattagccgcagcatcgaagaattacag
tgggatctcaattatctgatgcaattgtggcgcgccattgaagaagcggccaacgatatg
caaggcccactcctgatttatctagaatccagtttagtgatccgcgccatccgcgactat
tttcagcccgatattggcgaaatcttaattgatacggcagagattgaagagcaggcacgc
gcctttatgggcatcgtcatgcccgacagcctacataaagtcaaacgctaccatgacgat
gtaccgctgttttctcgctttcagatcgaacatcaaattgagaccgcttatgcgcgtacc
gtgtccctgccttctggcggctccgtcgtcatcgaccataccgaagcattagtctcagtt
gatgtcaattccgcccgcgcaacgaaaggcgccgacattgaagaaaccgcgctgcgcact
aatttggaagccgctgacgaagtcgctcggcagctcaggttacgagatctaggcggtttg
atcgttatcgattttatcgatatggaatctgccaagaatcagcgcgaagtcgagcagcgc
ctaaaagacgcgctcaaacatgaccgagcgcgcgtgcagatgagcaaaatttcgcgcttt
ggactgatggagctatcgcgccaacgactacgccccgccttatccgaaggcagccatgtc
acatgcccacgctgcaacggcacgggccatattcgcaatgccgaatcttccgctttgcaa
atcttgcgcattattcaagaagaagcgatgaaagaaaacaccgcgtcgattcattgccaa
gtgccaattgaagtcgcaactttcttactgaatgaaaaacgccaagaaattaacaaaatt
gaaagtcgctttaaagttggaattatcttaatcccaaacaaatatctggaaactccgcac
tataagctagaaagattgcggcacgacgaccctcatatcgatgagatccatatcagtcac
cgcatggctgaaaaagcagttcgtgaaatggaactggaaatggcttatagcaagcgtacg
gaagaaatccgccccaaacaggaagctgcggttaagggaatttcgccagaacagcctgcg
cctatcgctaagcgcagcaaactcagtcgtaccgctagcgcacatcggctggaaacagaa
aactccggtttatttagctggtttaagcgctggtttagtttctcccccgccgagctatcc
accactcctgaaaaaaccccttcgcaacgcacgcgcccagcccaagctaccactgagcga
gcagcggataaaagcgttgcacaagagcgtaataacaataacggccgtacccgccgcggc
agtaatgcaagccggaccggtgagcctaacaacgagcgggcggcacgtaacggcggcaag
cggcgtgatgcgcgcactccagccgaagagccggtggagatgctcgagccggcaacccca
acgcaggagcctagcgaacgccaagaacgcggcagacgcccagagcggagcggacggcag
gatcatagacgagcgccaacccctaccccggcacccaatcaaacggtcgcggcagcccca
gacgttcctagaacagaccgctctgatgaatttctggttgcctcagctgggcacccagat
ccggcctccacagctcaacccgaaggcgaagaacgtcgccgccgtcggcgcgggcggcgt
ggcggtcgccgcgaacgcgatgatgcaaaccaacctcgctcccgatcagctgaattttct
actgagttcactcaatcaaccgacagcgcgccgcgcttaccggaacaggctcagctacag
ccacctgcgccacctcagccagcaagtgtcaatgtgtcgcccgccggcaccgccattccg
aacccaccggctttagctgccactccagcagcacagcctgcaagctccctggcaccggct
ccagcaaacctgcccgagcctaaaatgacgccaaggcctgctgccttagatcggatgctt
gaaacaacccatcttgtcctcgtcaatacagatagcgataaactgcaccgtgctcatgaa
gccaccgctttaatcactgagccgccacgcgttagacgcgagcgcaagcgtttaccgcaa
gcagaaagcactccaattcaacaagttgaaaccgcaaaaatggccgagacaaaataa
DBGET
integrated database retrieval system
