Mycoavidus sp. B2-EB: MPB2EB_0972
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Entry
MPB2EB_0972 CDS
T09873
Symbol
rhlE2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
myco
Mycoavidus sp. B2-EB
Pathway
myco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
myco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MPB2EB_0972 (rhlE2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
myco03019
]
MPB2EB_0972 (rhlE2)
Enzymes [BR:
myco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MPB2EB_0972 (rhlE2)
Messenger RNA biogenesis [BR:
myco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MPB2EB_0972 (rhlE2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BBO59846
LinkDB
All DBs
Position
complement(1101781..1103223)
Genome browser
AA seq
480 aa
AA seq
DB search
MSETLISSASKTHAEDLPCFDHFGLHADILKALAGQGYTTPTPIQAQAIPVILAGHDVMG
VAQTGTGKTAGFSLPMIQRLVPYANTSASPARHPVRALVLTPTRELADQVAKNVWTYAEH
TALRSTVVFGGMDLHPQAAELRRGVEILIATPGRLLDHVQQKNVQLDHVQILVLDEADRM
LDMGFLPDLQRISNLLPRERQTLLFSATFSNEIKKLAASYLQSPVTIEVAQRNSTATNVR
QIVYEVAEGDKQAAVVQLIRQRGLKQAIVFCNSKIGASRLAGQLEREGIIAAAIHGDKTQ
NERMQALDAFKQGALEVLVATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGA
SGEALSLCSPHESKHLADIEKLIKRALEREPLMLETARTSSRTRHRDHPSSARHATGKRS
AQTVELDDFFSKPYQPANPIPQANPEVSDSARTNHLPKAAPKRPLAALLGGMSYKPKANQ
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaacacttatttcgtccgcgtctaaaacccatgccgaggatctgccgtgtttt
gaccattttggcctccacgccgatattctaaaggcattggctgggcaaggttacactacg
ccaacaccgattcaggcgcaggcaatcccagtgattctcgcgggccacgatgtgatgggc
gtggcgcaaacgggtacgggcaaaaccgcgggcttttcattgccgatgatccaacggctt
gtgccgtatgcaaataccagcgcttctccagcacggcatccagtgcgcgcattggtatta
actcctacacgtgagttagccgaccaagtcgctaaaaatgtgtggacctatgccgaacac
acggcattacgcagtaccgtcgtatttggtggcatggatctgcatccgcaagcggctgaa
ttacggcgtggcgtcgagattttgattgctacacctgggcgcctgttggatcatgtacag
caaaaaaacgttcaattggaccacgtccaaatactggtgctggacgaggcagatcgaatg
ttggatatggggttcttgcctgatttacagcgcatctcaaaccttttgccacgtgagcgg
cagactctgcttttttctgcgaccttttccaatgaaatcaaaaaattagccgccagctat
ttgcagagcccagttacaatcgaagtcgcgcaacgcaactcaaccgctaccaatgtccgc
cagattgtctacgaagtggcagaaggcgataagcaggcagcggtagtccagttaattcgc
cagcgtggtttaaagcaagcgattgttttttgcaatagcaaaatcggtgcgagccggctg
gcggggcaactagagcgcgaagggatcattgccgccgccattcatggcgataaaacccag
aatgagcggatgcaagcgcttgatgcgttcaagcagggcgccctcgaagtgctggtggct
acggatgtagctgcgcgtggcttggatattgctgagctacctgccgtgattaattttgat
ttgccttttagtgcagaagattatgtgcaccgaattggccgtactggccgggcgggggca
tctggggaggcgctttcattgtgtagcccacatgaatctaagcacttagccgatattgag
aaactcattaagcgcgcgcttgagcgtgagccgctgatgcttgaaacagcacgtacatca
agtcgtacgcgtcaccgagatcatccctcttccgcgcgtcacgcaaccggtaaacgatct
gcgcaaacggtggagctagacgattttttcagtaaaccttaccaacctgctaaccccatc
ccgcaagctaatccggaagtgtcagacagcgcccgcacgaatcatcttcccaaagcagca
ccaaagcgcccgttagccgccctgctaggcggcatgtcttataagcctaaggcgaaccag
taa
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