Myotis davidii (David's myotis): 102760523 Help Entry 102760523         CDS       T02992                                  Symbol UPF1 Name (RefSeq) UPF1, RNA helicase and ATPase   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism myd  Myotis davidii (David's myotis) Pathway myd03013   Nucleocytoplasmic transport myd03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:myd00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     102760523 (UPF1)    03015 mRNA surveillance pathway     102760523 (UPF1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:myd03019]     102760523 (UPF1) Enzymes [BR:myd01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      102760523 (UPF1)     5.6.2.5  RNA 5'-3' helicase      102760523 (UPF1) Messenger RNA biogenesis [BR:myd03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      102760523 (UPF1)    mRNA cycle factors     Common to processing body (P body) and stress granule      102760523 (UPF1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase NPHP3_N ATPase nSTAND3 Helicase_RecD DEAD AAA_16 UvrD-helicase SRP54 UvrD_C_2 AAA_22 Motif Other DBs NCBI-GeneID:  102760523 NCBI-ProteinID:  XP_006778463 LinkDB All DBs Position Un AA seq 1101 aa AA seqDB search MKEQEPGVLSPSWTPRRLSFSAPTHKAPSSSSQTSPSPARLRRLPEAPAVAAAGQLDVQV GGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYC NTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFI PAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQI TAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYD KKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGI GHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSV SGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTG KTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVS FLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTC VGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAK AGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDF QWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYE GQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPR RLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPR KLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQLGMISAGPSHVA AMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQKNRFGLPGPSQTNLPS SQASQDVASQPFSQGALTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQ DSTYQGERAYQHGGVTGLSQY NT seq 3306 nt NT seq  +upstreamnt  +downstreamnt atgaaggaacaggaaccaggagtcctgtcaccttcctggacaccgaggaggctgagcttc tcggcgccgacacacaaggctccgagttcgagttcacagacttcaccctccccagccaga ctcagacgcctcccggaggccccggcggtcgctgcggccggacagcttgacgttcaggtt ggaggacctgagggcatcctgcagaatggggctgtggatgacagtgtggccaagaccagc cagttgctggcggagttgaactttgaagaagatgaagaagatacctattacacaaaggac ctaccagtacatgcctgcagttactgtggaatacatgatcctgcttgcgtggtttactgt aataccagcaagaagtggttctgtaacggacgtggaaatacttctggcagccacattgta aatcaccttgtgagggcaaaatgcaaagaggtgactctgcacaaggatgggccccttggt gagacagtcctggagtgttacaactgtggctgccgcaacgtcttcctgcttggcttcatc cctgccaaggctgactcagtggtggtgctgttgtgcaggcagccctgtgccagtcagagc agcctcaaggacatcaactgggacagctcgcagtggcagcccctgatccaagatcgctgc ttcctctcctggctggttaagatcccttcagagcaggagcagcttcgggcccggcagatt acagcccagcagatcaacaagttggaggagctttggaaggagaacccttctgccaccttg gaggacctggagaagcccggagtggatgaggagccgcagcatgtcctcctgcggtatgag gatgcctaccagtaccagaacatatttgggcctctggtcaagctggaggctgactatgac aagaaactgaaagagtcacagactcaagataacatcacggtcaggtgggacctgggcctt aacaagaagagaatcgcctacttcactttacccaagactgactctgacatgcggctcatg caaggggatgagatatgcctgcggtacaaaggggacctggcgcccctgtggaaagggatc ggccacgtcatcaaggtccctgataattatggcgatgagattgccattgagctgcggagc agtgtgggtgcacctgtggaggtgacacacaactttcaggtggatttcgtgtggaaatcc acctcatttgacaggatgcagagtgcactgaaaacttttgctgtcgatgaaacctctgta tcaggctatatctaccataaactgcttggccacgaggtggaggacgtcatcatcaagtgc cagctgcccaagcgcttcactgcacaggggctgcccgacctcaaccactctcaggtttat gctgtgaagactgtgctgcaaaggccgctgagcctgatccagggaccaccaggaacaggg aagacagtgacctccgccaccattgtctaccacctggcacggcagggcaatgggcctgtg ctcgtctgtgctccaagtaacatagctgtggatcagctgactgagaagatccaccagact gggctgaaagttgtgcggctctgcgctaagagccgcgaggccattgactccccagtgtca ttcctggccctgcacaaccagatcaggaacatggatagcatgccagagctgcagaagctg cagcagctaaaggacgagactggggagctgtcatctgccgatgagaagcggtaccgagcc ctgaagcgcacagctgaaagggagctgctcatgaacgcggacgtcatctgctgcacatgt gtgggtgcaggagaccccaggctggccaagatgcagttccgctccattcttatcgacgag agcacccaggccacggagccggagtgtatggtccctgtggtccttggagccaagcagctg atccttgtgggtgaccactgccagctgggccccgtggtgatgtgcaagaaggcagccaag gccgggctgtcccagtcactgttcgagcgactggtggtgcttggcattcgtccaatccgc ctgcaagtccagtatcggatgcaccctgcactcagtgccttcccatccaacatcttctat gagggctctctgcaaaacggtgtcactgcagcggatcgagtgaagaaggggtttgacttc cagtggccccaacctgataagccgatgttcttctatgtgacgcagggccaggaggagatc gccagctcgggtacctcctacctgaacaggacggaggctgcaaatgttgagaagatcacc acgaagctgctgaaggcaggtgccaagccggaccagattggcatcatcacaccctatgag ggccagcgctcctacctggtgcagtacatgcagttcagcggctccctgcacaccaagctg taccaggaggtggagattgccagtgtggatgcattccaggggcgtgagaaggacttcatc atcctttcctgtgtgcgagccaacgagcaccaaggcatcgggtttttaaatgaccccagg cggcttaacgtggccctgacccgagcaagatatggagtcatcattgtgggcaaccctaag gcactgtccaagcagcccctgtggaaccacctgctgaattactacaaggagcagaaggtg ctggtggaggggcctctgaataacctgcgagagagcctcatgcagttcagcaagccccgg aagctggtcaacaccatcaaccctggagcccgcttcatgaccacagccatgtatgatgcc cgggaggccatcatcccaggatcggtctatgatcggagcagccagggtcggccctcgaac atgtacttccagacccatgaccagctcggtatgatcagtgctggccccagccatgtggcc gccatgaacattcccatccccttcaacctggtcatgccacccatgccaccaccggggtat tttggacaggctaatgggccggctgcaggccgaggcaccccgaaaggcaagacgggccgt ggtggacgccagaagaaccgctttggccttcctgggcccagccagacgaacctgcccagc agccaggccagccaggatgtggcatcacagcccttctctcagggggccctgacacagggc tacatctccatgagccaaccctcccagatgagccagcctggtctctcccagcccgagttg tcccaggacagttaccttggtgatgaatttaagtcccagattgatgtggcgctatcacaa gattctacgtaccagggagagcgggcgtaccagcatggtggagtgacgggactgtctcag tactag

DBGET integrated database retrieval system