Mycobacterium sp. EPa45: AB431_22855
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Entry
AB431_22855 CDS
T03960
Name
(GenBank) cold-shock protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mye
Mycobacterium sp. EPa45
Pathway
mye03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mye00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB431_22855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mye03019
]
AB431_22855
03009 Ribosome biogenesis [BR:
mye03009
]
AB431_22855
Enzymes [BR:
mye01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AB431_22855
Messenger RNA biogenesis [BR:
mye03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AB431_22855
Ribosome biogenesis [BR:
mye03009
]
Prokaryotic type
rRNA helicases
AB431_22855
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
HEM4
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
AKK29037
LinkDB
All DBs
Position
complement(4845936..4847630)
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AA seq
564 aa
AA seq
DB search
MTSPDDTPQTFADLQIHPAVLQAVADVGYETPSAIQAATIPALLNGSDVVGLAQTGTGKT
AAFAIPILSKIDPASRVTQALVLAPTRELALQVAEAFSRYGAHLKVNVLPIYGGSSYVPQ
LAGLKRGAQIVVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTP
EYKQVALFSATMPPGIKKITTKYLHDPVEVTVKSKTQTAENITQRYFLVSYPRKMDALTR
LLEVEQGDGMIVFVRTKQATEEVAEKLRARGFAAAAINGDIPQAVRERTISQLKDGSIDI
LVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLN
SIERVTRQKLVEGQLPSVEDVNAQRVEKFRDSITDALNAPGFEMFRRLIEDYERDNDVPL
ADIAAALALHSRNGEEFLMTEPPPEKRRERPDRPERGDRDRPPRKTRDDLAIYRVAVGKK
HKVGPGSIVGALANEGGLHRSDFGHITIKSDFSLVELPAKLSKETLKALEKTRISGVLID
LKPDRGGSRYDSRPPGGKPRRPTR
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgacatcccccgacgacactccccagaccttcgccgacctgcagatccaccccgcggtg
ctgcaggccgtcgctgacgtgggctacgaaacgccttccgcgatccaggccgccaccatc
ccagctctgctgaacggctccgacgtcgttggcctggcgcagaccggaaccggcaagacg
gcggcgttcgcaatccccatcctgtccaagatcgaccccgccagccgcgtcacccaggcg
ctggtgctggccccgacgcgtgagttggccctgcaggtcgccgaggcattcagccgttac
ggcgcgcatctcaaggtcaatgtgctgccgatctacggtggctcctcctatgtgccgcag
ctggccggcctcaagcgcggcgcgcagatcgtcgtcgggacgccggggcgtgtcatcgac
cacttggagaagggcagcctggacctgtcgcacctggactatctggtgctcgacgaggcc
gacgagatgctgcagatgggtttcgccgaagacgtcgaacggatcctggccgacaccccg
gagtacaaacaggtcgcactgttctcggccaccatgccgccgggcatcaagaagatcacc
accaaatacctgcatgatccggtcgaggtcacggtcaagtcgaagacccagactgccgag
aacatcacccagcgctatttcctggtgtcgtatccgcgcaagatggatgcgctgacccgg
ctgctcgaggtcgagcagggcgacggaatgatcgtgttcgtccgcaccaagcaggccacc
gaagaggtcgccgagaagctgcgggcccgcgggttcgccgcggcggccatcaacggcgac
atcccgcaggcggtgcgcgagcgcacgatcagccagctgaaggacggttcgatcgacatc
ctggtcgccaccgatgtcgctgcccgtggactggatgtcgagcgcatctcgcacgtggtg
aatttcgacatcccgcacgaccccgagtcctacgtgcaccggatcggccgcaccggccgc
gccggccgctcgggcacggcactgctgttcgtcaccccgcgtgaacgccacctgctgaac
tcgatcgagcgggtcacccggcagaagctggtcgagggccagttgccgtcggtcgaggac
gtcaacgctcagcgggtggagaagttccgggactcgatcaccgacgcgctgaacgcgccc
gggttcgagatgttccgtcggttgatcgaggactacgagcgcgacaacgacgtgccgttg
gccgatattgccgcggcgctggcgctacacagccgcaacggcgaagaattcctgatgacc
gaaccgccgccggagaagcggcgcgaacgacccgatcgccccgagcgaggtgaccgtgat
cgcccgccgcgcaaaacccgcgacgatctggccatttatcgcgtcgcggtcggcaagaag
cacaaggtggggccgggttcgatcgtcggcgcgctggccaacgaaggtgggctgcaccgc
agcgatttcgggcacatcaccatcaagagcgatttctcgctggtcgagctgcccgccaag
ctgtccaaggagacgctgaaagcgcttgagaagacccgtatttccggtgtgctgatcgac
ctcaagcccgaccgcggcggctctcgctacgactcgcggccccccggcgggaagccccga
cgcccgacccgatga
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