Mycoplasma sp. (ex Biomphalaria glabrata): ASO20_01780
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Entry
ASO20_01780 CDS
T04239
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
myg
Mycoplasma sp. (ex Biomphalaria glabrata)
Pathway
myg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
myg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ASO20_01780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
myg03021
]
ASO20_01780
03400 DNA repair and recombination proteins [BR:
myg03400
]
ASO20_01780
Enzymes [BR:
myg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ASO20_01780
Transcription machinery [BR:
myg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ASO20_01780
DNA repair and recombination proteins [BR:
myg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ASO20_01780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Acyl-ACP_TE
SHOCT
Motif
Other DBs
NCBI-ProteinID:
ALV23611
LinkDB
All DBs
Position
407811..411656
Genome browser
AA seq
1281 aa
AA seq
DB search
MKTHKDINYISLGLASPEKIIEWSHGEVTKSETINYKTQKPEPDGLFCEKIFGPVKDYEC
ACGKYKKVRNKGKVCERCEVEVTESIVRRERFGHINLAAPVTHIWMLKTSPSKLGQVLAL
KTKDIEEVVYFISYIVINEGGHEGKPKSGLKHKDILDQNQGREKLINSLRTILKQGNISD
NDIDLINVYLGDLANRELPYNFEEIIKLIERITGAKFGVGAEAIRELLENIDITIEIKNL
RNQISKNIGDISKNTKRLGVLEAFHDSQNKLEWMILTTLPVLPPNLRPIIQLDGGRFTSS
DINDLYRRIIIRNERLQKLIDVEAPKIVINNEKRMLQEAVDALLDNERKQKPFVSKDKRP
LKSLSEILKGKQGRFRQNLLGKRVDYSGRSVIIVGPELKMHECGLPREIALNLYKPFIIS
ELIRKNQDTKMNIKSAERRIQDKTDEVWEILEEVVKSRPVLLNRAPTLHRLGIQAFEPVI
IKSKAIRLHPLVTPAFNADFDGDQMAVHLPLSDEAIAEARALLIGSKNILGLKDGKPIVT
PTQDIVLGIYNLCREQLQKDEDINIFYQKDDVISAYEQNHISLHDIILLSTRAYPNKPFT
TSQKDGFIITTAGKVIFNDALPATMRFINSGNIRPSAQYIRSEHIVVFGKNSSTDFVGLK
DISELYNYLANEREAKIFNKKSLSLLIVNLFKDFKGETAYVLDQIKNLGFKFSTKAGVTI
SAFDLLFKDKNDDDIIFEYKKNVLQDSANKIKQYKSMYSDGLLTEEERKIQVTTEWTVAK
NKVQDKIEEIISSDKYRNNPIFQMIDSGARGNISNMTQLVGMRGLMSNPKGETIELPIKS
SFREGLDVSEFFISTHGARKGMADTALKTADSGYLTRRLVDVSQEIIVSVEDCFTSKSFV
VSNIVDTKTNSFIVPLKDRLVGRFIAENITIKGKKIIEANQLITDEIADEIVEANVERVQ
IRSLLTCEAEAGVCQKCYGTHLANNELVKIGEAVGVIAAQSIGEPGTQLTMRTFHTGGVA
GGSDITQGLPRIKELFDVTQPKGRVALISRVEGKVTKITDFNHGQYEITIEYERHDSDGK
KVKDYEVYKSKINSKLRVKMHDVVRIGQKLTDGSIDLRELLEVADVTEVQKYILKEVQRV
YRLQGIEISDKYIEIIVRQTLNKLVVIIPGDSKLLIGSHIDVNKFKKINKELLMNKKRPI
FAKPIILGIKKAPLESESFLSAASFQDTTRVLANVVIEGKSDHLVGLKENVIIGNLIPAG
TGLLTSEEIIELGNKAKSEQY
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atgaaaactcataaggatataaattatatctccttaggattagcatcaccagaaaaaatc
attgaatgatctcatggtgaagttactaaatccgaaacgataaactataaaacacaaaaa
ccagaaccggatggtttgttttgtgaaaaaatatttggtccagtaaaagattacgaatgt
gcttgtggaaaatataaaaaagtacgtaacaaaggaaaagtttgtgaacgctgtgaagtg
gaagttactgaatcaattgttcgtcgtgaaagatttggacacatcaatttagctgctcca
gttactcatatttgaatgttaaaaacttctccaagtaaattggggcaagttttagctttg
aagactaaagatattgaagaagttgtttattttatttcatatatcgtcattaatgaaggt
ggacatgaaggaaaacctaaatctggattgaaacacaaagatatattagatcaaaaccaa
ggtcgtgaaaaattaatcaattctttgagaacgattttaaaacaaggaaatatttcagat
aacgatatagatttaatcaatgtttacttaggagatttagcaaaccgtgaattaccatat
aattttgaagaaattattaaattaattgaaagaattacgggtgcaaaatttggggtagga
gctgaggcaattagagaattgctagaaaatatcgatatcacaatagaaattaaaaatcta
cgtaaccaaatttctaaaaatattggtgatatttctaaaaatacaaaaagattgggagtt
ttagaagcatttcatgatagtcaaaataaacttgaatgaatgatcttaactacattacca
gttttaccgccaaacttgcgcccaattattcaattggatggaggaagatttacatctagc
gatattaatgatttgtatagaagaattatcattagaaatgaaagattgcaaaaattaatc
gatgttgaagcaccgaaaattgttattaataacgagaaaagaatgctccaagaagcagta
gatgccttattagataacgaaagaaagcaaaaaccatttgtaagtaaagacaaacgtcct
ttaaaatcactaagtgaaattttaaaaggaaaacaaggtcgttttcgtcagaatctatta
ggaaaaagagttgactattcaggtagaagtgtaattatcgttggacctgaattaaaaatg
catgaatgtggtctacctcgtgaaatcgctttaaatctttataaaccatttattattagt
gaattgatcagaaaaaatcaagatactaaaatgaatatcaaatcagctgaaagacgtatt
caagataaaacagatgaagtttgagaaattcttgaggaagtggttaaatcacgtccagtt
ttattaaatcgtgctccaactcttcatagattaggaattcaagcttttgaaccagttatt
atcaaatcaaaagctattagattacaccctctagtgacaccggccttcaatgccgatttc
gatggagaccaaatggctgttcatttacctctttcagatgaagcgatagctgaagcaaga
gctttactgataggttcaaaaaacattcttggtctaaaagatggaaaaccaattgtaaca
cccactcaggatattgttttaggaatttacaatttatgtcgtgaacaattacaaaaagat
gaagatattaatattttttaccaaaaagacgatgtaatttctgcatacgaacaaaaccat
atttcattgcatgatatcattcttttatcaacaagagcatatcctaataaaccttttaca
acaagccaaaaagacggttttatcattacaacagctggaaaagtaatttttaatgatgct
cttccagcaacaatgagatttattaatagcggaaacattcgtccatcagctcaatacatt
cgatcagagcacattgtagtttttggaaaaaattcttcaactgattttgttggattaaaa
gatatttcagagttatacaattatttagctaatgaacgcgaagctaagatttttaataaa
aaatccttatcacttttaattgttaatttatttaaagactttaaaggtgaaacagcatat
gttttagatcaaattaaaaatttaggatttaaattttcaacaaaagctggtgtaacaatt
tcagcattcgacctattatttaaagataaaaatgatgatgacattatttttgaatacaaa
aaaaatgtccttcaagattcagctaataaaatcaaacaatataaatctatgtatagcgat
ggattattgactgaagaagaacgaaaaattcaagtaacaactgaatgaactgttgcaaaa
aacaaagttcaagacaaaatcgaggaaatcatttcttcagataagtatcgtaataatcca
atttttcaaatgattgattcaggagcgagaggaaacatttctaacatgactcagttagtt
ggtatgcgtggattgatgagtaatccaaaaggtgaaacaatcgaattaccaattaagtca
tcattccgcgaaggtctagatgtatcagaattctttatttctactcatggtgctcgtaaa
ggaatggctgatacagccttaaaaacagctgactcaggttatttgactcgaagattagta
gatgtttctcaagaaattattgtttctgttgaagattgttttacaagtaaatcatttgtt
gtttcaaatattgtagacacaaaaacaaattcatttattgttccgttaaaagatcgttta
gttggtagatttattgctgaaaatataacaataaaaggtaaaaaaattattgaagctaac
caattaattacagatgaaattgctgatgaaatcgtagaagcaaacgttgagagagtacaa
attcgttcattactaacttgtgaagctgaagcaggtgtttgtcaaaaatgttatggaact
catttagctaacaatgaacttgttaaaattggcgaagctgtaggtgttattgccgctcag
tctattggtgaaccaggaactcagttgacaatgagaacattccatactggtggtgttgct
ggtggtagtgacattacacaagggttaccaagaattaaagaattattcgatgtaactcaa
cctaaaggaagagttgccttaatttctagagttgaaggtaaagttacaaaaataactgat
tttaatcatggacaatacgaaattactattgaatacgaaagacatgattcagatggtaaa
aaagttaaagactatgaagtttataagtcaaaaattaattcaaaattacgtgttaaaatg
cacgatgtagtacgaattggtcaaaaattaactgatggaagtattgatttacgtgaattg
ctagaagtggccgatgtaacagaggtacaaaaatatatcctaaaagaagttcaaagagtt
taccgtttacaaggtattgaaatttcagacaaatatattgaaattattgttcgtcaaacg
ttaaataaattggttgttatcattcctggtgattcaaaattattaataggttcacatata
gacgttaataaattcaaaaaaatcaacaaagaactactaatgaataaaaaacgtcccatt
tttgcaaaaccaattattcttggtatcaaaaaagctccgcttgaaagtgaatcattttta
agtgctgcttctttccaagacacaactagagttttagcgaacgtagttatcgaaggaaaa
tctgatcatttagttggattaaaagaaaatgttattattggaaatttaattccggccgga
actggtttattaacaagtgaagaaataattgaacttggtaataaagcgaaaagtgaacag
tattaa
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