Mycolicibacterium sp. HK-90: QU592_22170
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Entry
QU592_22170 CDS
T11081
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
myh Mycolicibacterium sp. HK-90
Pathway
myh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
myh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QU592_22170 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
myh03021
]
QU592_22170 (rho)
03019 Messenger RNA biogenesis [BR:
myh03019
]
QU592_22170 (rho)
Transcription machinery [BR:
myh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
QU592_22170 (rho)
Messenger RNA biogenesis [BR:
myh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
QU592_22170 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA_25
NACHT
AAA_22
VWA_2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
WKG01926
LinkDB
All DBs
Position
complement(4630412..4632427)
Genome browser
AA seq
671 aa
AA seq
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MTDTDLFTADNANGTGDLPNAVTSESTATADTAAPAAASAPGSDTARRASSARPASLSTM
VLPELRALAKEIGVEGASGLRKSELIAAIRAHRGESNGATAEAPEQAPTDVQPDAGTEAA
EQPAPRRRERRGSSRQAGSPAADAVKTDAGEDSAPAEAKAEAPVAAGTETKGAEPPAEAQ
EKPAKQDKRERQERRDKREQSDGENKSDAKQDDKRDQKQDRDQKQDKRDQSDQSDNQQNR
GGNSNADGDDDGEGRQGRRGRRFRDRDRRRRGERGAEGGNDTELREDDVVQPVAGILDVL
DNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAVRVPREGESGGNNPRQKFNPL
VRLDSVNGGPVENAKNRPDFTKLTPLYPNQRLRLETTPERLTTRVIDLIMPIGKGQRALI
VSPPKAGKTTIMQDIANAITKNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPP
SDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYP
PKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFP
AVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQV
SKTAPGSMDVD
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
gtgacagatacggacctcttcacggctgacaacgccaacggcactggggatttgccgaac
gccgtgacatctgaaagcactgcgaccgctgacaccgcggcgccggctgctgcctctgcg
cccggatcggacaccgcgcggcgcgcttcgagcgcccgtcccgcgtcgctgtcgaccatg
gtgctgcctgagctgcgagcgctggccaaggaaatcggtgttgaaggcgcgtccggtttg
cgcaagagtgagttgatcgcagctatccgcgcccaccgcggtgagtccaacggtgccacc
gccgaggctcctgaacaggcccccaccgacgtccagccggacgccggaaccgaagctgcc
gagcagccggcgccccgtcgccgcgagcgtcgcggttcgtcgcgccaggccggttccccg
gccgcggatgccgtcaagaccgatgcgggcgaggattcggcccccgccgaggcgaaggcc
gaggccccggtcgcggccggtaccgagaccaagggcgccgaaccgcccgccgaggcccag
gaaaagcctgccaagcaggacaagcgcgagcggcaggaacggcgcgacaagcgcgagcag
tccgacggcgagaacaagtccgacgccaagcaggacgacaagcgcgatcagaagcaggat
cgcgaccagaagcaggacaagcgcgatcagtccgaccagtccgacaaccagcagaaccgc
ggcgggaactccaacgccgacggtgacgacgacggcgagggccgtcagggtcgccggggt
cgccggttccgcgaccgtgaccgccgccgtcgcggcgagcggggcgccgagggcggtaac
gacaccgagttgcgcgaggacgacgtcgtccagccggtcgccggcatcctcgacgtcctg
gacaactacgcattcgtccgcacctcgggctacctggccggaccgaacgacgtgtacgtg
tcgatgaacatggtgcgcaagaacggtctgcgccgtggtgacgccgtcaccggcgcggtc
cgggtgccccgcgagggcgaaagcggcggcaacaacccgcggcagaagttcaatccgctg
gtgcgtctcgacagcgtcaacggcggcccggtggagaacgccaagaaccggcccgacttc
accaagctgaccccgctgtacccgaaccagcggctgcgcctggagaccacgcccgagcgg
ctgaccactcgcgtgatcgacctgatcatgccgatcggcaagggccagcgtgccctgatc
gtgtcaccgcccaaggccggtaagaccacgatcatgcaggacatcgccaacgcgatcacc
aagaacaacccggagtgccacctgatggtggtcctggtggacgagcgtcctgaagaggtc
accgacatgcagcgttcggtgaagggtgaggtcatcgcctcgaccttcgaccggccgccg
tcagaccacacccaggccgccgagctggccatcgagcgcgccaagcgcctggtcgagcag
ggcaaggacgtcgtggtgctgctggattcgatcacccgtctgggtcgtgcgtacaacaac
gcgtccccggcctcgggccgcatcctgtccggtggtgtggattccaccgcgctgtacccg
ccgaagcggttcctcggcgcggcgcgcaacatcgagcacggcggctcgctgaccatcatc
gccaccgcgatggtcgagaccggctcgaccggtgacaccgtgatcttcgaagagttcaag
ggcaccggcaacgccgagctcaagctcgaccgcaagatcgccgagcgccgggtgttcccg
gcggtcgacgtcaacccgtccggcacccgtaaggacgagctgctgctctcgccggacgag
ttcgcgatcgtgcacaagctgcgccgcgtcctctcggggctcgacagccaccaggccatc
gacctgctgatgagccagctgcgcaagaccaagaacaactacgagttcctggtgcaggtc
tccaagaccgccccgggctccatggacgtcgactaa
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