Mycolicibacterium sp. HK-90: QU592_24385
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Entry
QU592_24385 CDS
T11081
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
myh Mycolicibacterium sp. HK-90
Pathway
myh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
myh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QU592_24385 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
myh03400
]
QU592_24385 (mfd)
Enzymes [BR:
myh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QU592_24385 (mfd)
DNA repair and recombination proteins [BR:
myh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QU592_24385 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
LSDAT_prok
DUF3638
Motif
Other DBs
NCBI-ProteinID:
WKG02327
LinkDB
All DBs
Position
complement(5080455..5084087)
Genome browser
AA seq
1210 aa
AA seq
DB search
MTAPGHNHVQTPIAGLVELALTDPSLQDVIRRAAERPADLALVGPASARVLVAAGLAQHG
PLLVVAATGREADDLTAELRGVFGDSVALFPSWETLPHERLSPGVETVAARLLLLRRLAH
PDDEKLGPPLRVVVTTTRSLLQPMAPDVVGTEPVTLTVGAEAEFDAVIARLVDLAYTRVD
MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRMFSIADQRSIPEIPVQNVVAV
PCRELLMTDDVRERAAVLAAEHPTHENSVPGSVPDMLAKLAEGIPVDGMEALLPLLHPVQ
PTTLTHHLPDGAPVLLCDPEKVRTRAADLIKTGQEFLEASWSTAAVGGDAPIDIEALGAS
GFVPFDQAREDAVAGGHPWWTLSQLPDEKATELDLRPSPSARSQQSLEEIFAMLRAHVAT
GGYAAVVTPGAGTAHRVVEQLGESDTPAGMLEPGAAPKAGVVGVLKGPLHDGVILQGANL
VVITETDLTGNRVTASESKKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTERVVGG
ARREYLVLEYASSKRGGGSDRLYVPMDSLDQLSRYVGGEAPSLSKLGGSDWANTKTKARK
AVREIASELVALYAKRQSAPGHAFGPDTPWQNEMEDAFGFTETMDQLTAITEVKSDMEKP
VPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNRMAGFPVT
VKGLSRFTDPAESRQTMEGMADGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQRFGVEHK
EHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQVA
AALRRELLRDGQAFYIHNRVRTIDQAAARIRQLVPEARVVVAHGQMNEEMLEKTVEGFWN
REYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPN
SPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRLV
GEAVEAYRAAADGKTVATPQEPKEVRVDLPVDAHLPPEYIGSDRLRLEGYRRLAAATDED
AIRAVVDELVDRYGPLPEPAQRLVAVARLRLLCREYGVTEIGAVSASTVKLSPMVLPDSA
QLRLKRMYPGGHYRATTSTVQVPLPRAGDGVGAPRIRDLELVQWVAGLVLVLNGQTQGSV
DMTAGLFSPA
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggcacaaccatgtccagaccccgatcgcgggtctcgtcgagctggct
ttaaccgatccgtccctgcaggacgtcattcgtcgcgccgccgagaggcccgccgatctc
gcactcgtcgggccggccagtgcccgcgtcctggtggccgccgggttggcccagcacggt
ccgttgctggtggtcgccgccaccggtcgcgaggccgacgacctgaccgccgaactgcgc
ggcgtcttcggagattccgttgcgctgttcccgtcctgggagacgcttccgcacgagcgg
ttgtccccgggtgtggagacggtcgcggcccggttgttgctgctgcgccggctggcccat
cccgacgatgagaagttgggcccgccgctgcgggtggtggtgaccaccacccgctcgctg
ctgcagccgatggcccccgacgtggtcgggaccgagccggtcaccctcaccgtcggtgcc
gaggccgagttcgacgcggtcatcgcccggctggtcgacctggcctacacccgcgtcgac
atggtcggcaaacgcggcgagtttgcggtccgcggcggcatcctcgacgtgttcccgccc
acggccgagcacccggtccgcgtcgagttctggggcgacgagatctccgagatgcggatg
ttctcgatcgccgaccagcgctcgattccggagatcccggtgcagaacgtcgtcgcggtg
ccgtgtcgcgaactgctgatgaccgacgatgtgcgtgagcgcgccgccgtcctcgccgcc
gagcaccccacccacgagaacagcgtgccgggcagcgtgcccgacatgctggccaaactg
gccgagggcatcccggtcgacgggatggaagcgctgctgccgctgctgcatccggtgcag
ccgacgacgctcacgcatcatctgcccgacggggctccggtgctgctctgcgacccggaa
aaggtgcgtacccgcgcggccgacctgatcaagaccggccaggagttcctggaggcctcg
tggtcgacggccgcggtcggcggcgacgcaccgatcgacatcgaggcgctcggggcgtcc
ggcttcgtgccgttcgaccaggcccgtgaggacgccgtcgccggtgggcacccatggtgg
acgttgagccagctgcccgacgagaaggccaccgaactcgatctgcggccctcgccctcg
gcccgcagccagcagagcctcgaagagatcttcgcgatgctgcgcgcccacgtggccacg
ggcgggtatgccgcggtggtcaccccaggcgccggtactgcgcaccgcgtcgtcgagcag
ctcggggaatccgacactcccgcaggcatgttggagcccggggcggcgcccaaggccggt
gtggtcggggtgctcaagggcccgctgcacgacggcgtgatcctgcagggtgcgaacctc
gtggtcatcaccgagaccgatctgaccggtaaccgagtcacggcctcggagagcaaaaag
cttgcggccaaacgccgcaacgtcgtcgatccgctggcgctgaccgcaggtgatctcgtg
gtgcacgatcagcacggcatcggcaagttcgtcgagatgaccgagcgggtggtcggcggc
gcccgccgcgagtacctggtgctggagtacgcgtcgtccaagcggggcggcggatcggac
cggctgtacgtgccgatggactcgctcgaccagctctcccgctatgtcggcggtgaggcg
ccctccctgtcgaagcttggcggcagcgactgggcgaacacgaagacaaaggcgcgcaag
gccgttcgtgaaatcgccagcgaactcgtcgccctgtacgccaagcgacagtcggcgccc
gggcacgcgttcggtccggacaccccatggcagaacgagatggaggatgcgttcggcttc
accgagaccatggatcagttgaccgcgatcaccgaggtcaaatccgatatggagaagccg
gttccgatggaccgggtgatctgtggcgacgtgggttacggcaagaccgagatcgcggtg
cgggcggcgttcaaggccgtgcaggacggcaagcaggtcgcggtgctggtgccgacgacg
ctgctggccgaccaacatctgcagaccttcaccaaccggatggcgggcttcccggtgacg
gtcaaggggttgtcgcggttcaccgatccggccgagtcccgccaaaccatggaaggcatg
gccgacggctcggtcgacgtggtgatcggcacgcaccggttgctgcagaccggcgtgacg
tggaaagacctgggactcatcatcgttgacgaggagcagcggttcggcgtcgaacacaaa
gaacacatcaagtcgatgcgcacccacgtcgacgtgctcaccatgagcgccaccccgatc
ccgcgcacccttgagatgagcctggccggcatccgcgagatgtcgacgattctcaccccg
cccgaggagcgctacccggtgctgacctacgtcggcccccacgacgacaaacaggtggcc
gcggcgctacgccgcgagctgctgcgtgacgggcaggccttctacatccacaaccgggtc
cgcaccatcgatcaggccgcggcccggatccgccagctggttcccgaggccagagtggtt
gtggcgcacggccagatgaacgaggagatgctggagaagaccgtcgaaggcttctggaac
cgcgagtacgacatcctggtgtgcaccacgatcgtcgagaccggcctggacatttccaac
gccaacacgctgatcgtcgagcgcgccgacaccttcggtttgtcgcagctgcatcagctg
cgaggccgggtggggcgcagccgcgaacgcggttatgcgtacttcctgtacccgccgaac
tcgccgctgaccgagacggcctacgaccggttggccaccatcgcgcagaacaacgagttg
ggcgcgggtatggccgtggccatgaaggacctggagattcgcggcgcgggcaacgtgctg
ggcgtcgagcagtccggtcacgtcgccggggtgggtttcgatctctacgtgcggctggtc
ggtgaggccgtcgaggcctaccgcgccgctgctgacgggaaaaccgttgccaccccgcag
gaaccgaaagaggtccgggtcgatctgccggtcgacgcacacctgccgccggagtacatc
ggcagtgaccggctgcggctggagggctaccggcggctcgccgcggctacggacgaggat
gcgatcagggctgtcgtggacgagctcgtcgaccgctacggtccgctgcccgaacccgcg
cagcgcctggtcgcggtggcccggttgcggctgctgtgccgggagtacggcgtcaccgag
atcggtgcggtgtcggcctcgacggtgaagctgtcgccgatggtcctgccggactccgcc
cagctcaggctcaagcgcatgtaccccggcgggcattatcgggccaccacgtccaccgtg
caggtgccgctgccgcgtgccggcgacggtgtcggcgcgccgcgcattcgcgatcttgaa
ctggttcagtgggtggccggactcgtgctcgtgctcaacgggcagacgcagggcagcgtc
gacatgaccgcgggacttttttctcccgcctga
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