Mizuhopecten yessoensis (Yesso scallop): 110440916
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Entry
110440916 CDS
T05079
Name
(RefSeq) general transcription factor IIH subunit 1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
myi
Mizuhopecten yessoensis (Yesso scallop)
Pathway
myi03022
Basal transcription factors
myi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
myi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110440916
09124 Replication and repair
03420 Nucleotide excision repair
110440916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
myi03021
]
110440916
03400 DNA repair and recombination proteins [BR:
myi03400
]
110440916
Transcription machinery [BR:
myi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
110440916
DNA repair and recombination proteins [BR:
myi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
110440916
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
SHOCT
Motif
Other DBs
NCBI-GeneID:
110440916
NCBI-ProteinID:
XP_021339710
LinkDB
All DBs
Position
Unknown
AA seq
570 aa
AA seq
DB search
MSTSRSSEDVLLIVNHVRHKKTDGVLYLMGERMGWMVESKNSFSLSHMYSDIKSQKISPD
SKDKVQLQVVMHDGSAKTFHFTNPKGRDVGIKDRDGIKELLQQLLPKFRSKISSELEEKN
RLLQESPELFQLYKDLVVSGVITAEEFWESRADQLSNIGKNEGSKQSVGVSAAFLADIKP
QTDGCNGLKYNLTADVIESIFRTYPMVRKKHAENVPHEMTESEFWTRFFQSHYFHRDRTV
LSSKDVFSDCAKNDDREIKDEVTRTVNDPLLDMLKMTDSNSGDGFGGSSDERKLSTNQTN
LTMIRRFNHHSTMVLKACESNRTTKPQDATDGASGTSDNGPKRSNGAVATVTNGDTDTSS
TSSDMFKEPAAKRAKIREKLAYEDLEGRTHSKNVNLRLHKTDGYLHGPRPVVLSKYMTSD
DAVSASNSVSQKISDWAPELSNVLRGSAALGVLGELSPGGSLMYGTSHQQLHNMVAVDVQ
SELKKQYTALQELLRHFWSCFPASSKFLEEKVCRMKSTLERFQVTKLIPFKESLKQHHYT
IDLVGHLEELLSTAYAKFDTWQARKMAKRS
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgtctaccagtagatcctcagaagatgtcctgctcattgtgaaccatgtacgacacaag
aagacggatggtgtgctatacctcatgggagagaggatgggctggatggtggagagcaag
aacagcttctccctcagtcacatgtactccgacatcaaaagtcaaaaaatatctcccgac
tccaaggacaaagtgcagcttcaggttgtgatgcatgatggcagtgcgaagacattccat
tttacaaaccccaaaggtcgagatgttgggatcaaggatagagatggtatcaaggaactc
ttacagcaactgcttccaaagttcagaagcaagataagcagtgaactggaggaaaaaaac
agattattgcaagagagtcctgaattgtttcagttgtataaagacttagtggtcagtggt
gtgataacggcagaggagttctgggaatcacgggctgatcaactatcgaacatcggcaag
aatgaaggcagcaagcagtcagtgggtgtgtcggcagcttttctggctgacatcaaaccc
cagacggatggctgtaatggtctcaagtacaatctcaccgctgatgttatagaatctata
ttcaggacatatccaatggtgaggaagaaacatgccgagaatgtaccgcatgagatgaca
gaaagtgaattctggacaaggttttttcagtctcactatttccatagagaccgaactgtc
cttagcagtaaggatgtgttctccgactgtgccaagaatgatgacagggaaataaaagat
gaggtaacacgaacagtaaatgaccctctactggacatgttaaaaatgaccgattcaaat
tcgggtgatggctttggcgggtcgtcagatgaacgtaagctcagcacgaatcagaccaac
ttgaccatgattcgtcgattcaatcatcactctactatggttctgaaggcgtgtgaaagt
aacagaacaacaaaacctcaggatgccactgatggggccagtggcactagtgacaatggc
cccaagaggtccaatggggccgtggccacagtaaccaatggtgatacggacaccagtagt
acaagctcagatatgtttaaagaacctgcagccaagcgagcaaagattcgggaaaaactg
gcatatgaggatttggaaggtagaactcattctaaaaatgtgaatttaagactacataaa
acggacggataccttcatggtccaagaccagtggtgttatctaagtacatgacgagtgat
gatgcagtcagtgcatcaaactctgtgtcacagaaaatctctgactgggctccggaactc
tctaatgtgctgcgaggatccgctgctctaggtgttttgggggaactgtcaccaggtggc
tctctgatgtatggcacaagtcaccagcagctccacaatatggtggcagtagatgtccag
agcgagttgaagaaacagtacacggctctacaggaacttctcaggcatttctggtcctgc
ttcccggcctcttctaagttcttagaagaaaaggtttgcagaatgaagtcaactttagaa
agatttcaagtaacaaaactcattccatttaaggaatctctcaaacagcatcactacaca
atagatcttgtggggcacctggaagagcttctgtctacagcctatgctaaatttgatact
tggcaagcaaggaaaatggctaagaggtcatga
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