Mizuhopecten yessoensis (Yesso scallop): 110441842
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Entry
110441842 CDS
T05079
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
myi
Mizuhopecten yessoensis (Yesso scallop)
Pathway
myi03020
RNA polymerase
myi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
myi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110441842
09124 Replication and repair
03420 Nucleotide excision repair
110441842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
myi03021
]
110441842
03400 DNA repair and recombination proteins [BR:
myi03400
]
110441842
Enzymes [BR:
myi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110441842
Transcription machinery [BR:
myi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
110441842
DNA repair and recombination proteins [BR:
myi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
110441842
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_5
Motif
Other DBs
NCBI-GeneID:
110441842
NCBI-ProteinID:
XP_021340784
LinkDB
All DBs
Position
Unknown
AA seq
1107 aa
AA seq
DB search
MAYTGDSNAPMRDAKRVQFGILSPDECRRMSVTDGGIRYSRMMECWRPKLNGLMDPRQGT
MDRNAHCQTCAGNMSECPGHFGHIELSKPVFNVGFFKKTIKVLRCVCFFCSKLLVDPTDP
KIRDILTKSKGQPIKRMARVYKLCKNKRICEGGDEMETELGEQQNREGDEEKTGHEGCGR
FQPQIKRTGLELVAEWKQVNEESQERRIMLTAERVHKIFKRISDEECLVMGMEPKYARPD
HMIITVMPVPPLSVRSAVVMSGPARCQDDLTHKLLDIIKANNELKRNEQNEAPPHIISEY
TKVLQFHVATLTDNEMPGLPKAVHYKSGRPLKSVKQRLKGKEGRLRVDLMRKCVDFSART
VITPDPNLRIDQVGVPRSIAQNMTFPEVVTPFNIDRMYELVRRGSKQYPGAKYILRDNGE
KINLSSHPKASDLHLKIGYEVERHMQDNDYVVLNRQPTLHKMSMMCHRVKVLPWSTFRLN
VSVTTPYNADFDGDEMNLHLPQSLETQAEISNLALVPRMIITPQSNRPVMGIVQDTLTAV
QKMTKRDVFINRGEIMNLLMFLPTWDGHIPQPAILKPKPLWTGKQLFSLIIPGRVNCIRT
HSTHPDEEDSGPYKWISPGDTRVLIEDGVLISGILCKKTLGTSSGSLPHVVFMEMGYEVA
GLMYGHIQTVINNWLLLEGHSIGIGDTIADPQTYIDIQDTIKRAKADVMDVIEKAHNDEL
EPTPGNTLRQTFENKVNRILNNARDKTGGKAQKSLSDFNNFKAMVVAGSNGSKINTSQVI
ACVGQQYVEGKRIPFGFRHRTLPHFIKYDYGPESRGFVENSYHAGLTPSEFFFHAMGGRE
GLIDTVVKTAETGFIQRRLFKAMENVMVKYDGTIRNQVEQLVQLTYGEDGLDGVWVEFQA
LPTLKPSHKSFEKKFKFDASSERNMRKCLTEDIIKELIGDATAISELEKEWDQLKEDRDV
LRKIFPMGDSKVVLPCNLTRLVWNAQKRFRINKRKPTELHPVKIVTGVADLCKRLITVPG
ADRLSVQANYNATILIKCLVRSTLCAKRVTEEFRLSSEAFEWLLGEIETRFQQAHVCILF
SNLLFSNMFIFECTIVSLLSQPKVAGW
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atggcgtacacaggcgattcaaacgcccctatgagagacgcgaagagagtccagttcggc
attctcagtcccgacgaatgtcgacgaatgtcggtaactgatggaggtatccgatattca
aggatgatggaatgttggcgtcccaagctaaatggattgatggacccacgacaaggaacc
atggacagaaatgcccattgtcagacttgtgctggcaacatgtctgaatgtccaggtcac
tttggtcacatagaattgtcaaaaccagttttcaatgttggcttcttcaaaaagacgatc
aaagtgctgagatgtgtgtgtttcttctgctccaaattgttggtagacccgactgatccc
aaaatcagggatattctgaccaagtctaagggacagccaataaaaagaatggctcgtgta
tacaagctatgtaagaacaaacggatctgtgaaggaggagatgaaatggagacagagtta
ggggagcaacaaaaccgagagggggatgaagaaaaaacgggccatgaaggttgtgggcgc
tttcagcctcagatcaaaagaacaggtttggaactggtggctgaatggaaacaagtaaat
gaggagagtcaagagagaaggatcatgctgacggcagagagagttcacaagatattcaag
agaatatcggatgaggaatgtttggtgatgggaatggagcccaagtatgctcgccctgac
catatgatcatcacagtaatgccagtgccaccactctctgttaggtcagctgtggtcatg
tctggtccagccagatgtcaggatgatttgactcacaagttattagacattatcaaagcc
aacaatgagttgaagaggaatgaacagaatgaagctccaccacacatcatatcagaatac
acaaaagtgctacaattccacgtggccacactcactgacaatgagatgcctggccttcca
aaggctgtacattataagtcgggccgacctctgaagtctgttaaacaaaggctgaaggga
aaggaaggacgtctccgagtggacttgatgcggaaatgtgtggacttctctgccagaact
gtcattaccccagatccaaacctcaggattgaccaggtcggggtgcctagaagtatagca
cagaacatgacgtttccagaggtagtcacacccttcaacatagacagaatgtacgagctt
gtgcggagagggtcaaagcagtacccaggagccaaatatattctaagagacaatggtgag
aagataaacctaagttctcaccccaaagccagtgacctccatctcaagattggttacgag
gttgagagacacatgcaggataacgactatgtggtgttaaacagacagccaaccctccac
aaaatgagtatgatgtgtcacagggttaaggtgctgccatggtcaaccttcagattgaat
gtcagtgtaaccacaccctacaatgctgactttgatggggacgagatgaacctccattta
ccacagtccctggaaacacaggcggagatctcaaacctcgctttggtcccaaggatgatc
atcactccccagtccaacaggcctgtcatgggtatcgtacaggacacactgactgctgtc
caaaagatgacaaagagagatgttttcattaacaggggtgaaataatgaacctgcttatg
tttctgccaacatgggacggccatattcctcaacctgctatactcaagcctaaaccactt
tggacaggaaagcagctattctcccttatcatccctggccgcgtaaactgtatcaggacc
cacagtacacatcctgatgaggaggactctggcccatacaaatggatttcccctggagac
accagggtgttgattgaggatggcgtgctgatcagtgggatcctatgtaagaagaccctg
ggtacatccagcggctccctaccccacgttgtatttatggagatggggtacgaggtagca
ggacttatgtatggtcacattcagactgtaattaacaactggcttctactggagggacac
agtatcggtattggagacacaattgctgaccctcagacctatatagacatccaggacacc
atcaagagagccaaggcggacgtgatggacgtcattgagaaggctcacaatgatgagttg
gaaccaacaccaggaaacacactgcgtcagacttttgaaaacaaggtgaatcgtatcttg
aacaatgctcgtgacaaaactggaggaaaagcccagaagtccttatcagatttcaacaac
ttcaaagctatggtggtggcaggatccaatgggtccaagattaacacctcccaggtcatt
gcctgtgtggggcaacaatacgttgaaggtaaacgtattccgtttggttttcgacatcga
acactgcctcatttcatcaaatatgattatggtcctgagtcaagagggtttgtggagaat
tcctatcatgctggtctgacgccatctgagttctttttccacgccatgggaggtcgagaa
ggacttattgatactgttgtgaaaactgctgagactgggttcattcagcgacgtctgttc
aaggctatggagaatgtgatggtaaagtacgatggtacaatcagaaaccaggtagaacag
ttggtccagttgacgtatggggaggacggacttgacggtgtctgggtcgagttccaggcg
ctcccaacactcaaaccttcacacaaatcctttgagaaaaagttcaagtttgatgcttca
agtgagagaaacatgcggaagtgtctgacggaggacatcattaaggagctaattggtgat
gccactgccatatctgagctggagaaggaatgggatcagctgaaagaagatcgtgatgtg
ctgcgaaagatcttccccatgggtgacagcaaggtggtcctgccctgtaatctaacaaga
ctcgtctggaatgcacagaaacgcttcaggatcaacaagcgtaaacctacagaactccat
ccagttaaaatcgtgacaggtgttgctgacttgtgcaaacggttgatcactgtccctgga
gctgacagactcagtgtgcaggccaattacaatgccaccattctgatcaagtgtctggtg
cggtccaccctatgtgccaagcgagtgacagaagagttcagacttagctctgaggcattt
gagtggctgcttggtgaaattgagacgcgctttcaacaggctcatgtatgtatcttattc
tcaaacttgctgttttccaatatgtttatatttgaatgtaccatagtgtctctactttcc
cagccaaaagtggcgggatggtga
DBGET
integrated database retrieval system
