Mizuhopecten yessoensis (Yesso scallop): 110441851
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Entry
110441851 CDS
T05079
Name
(RefSeq) probable ATP-dependent RNA helicase DDX23
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
myi
Mizuhopecten yessoensis (Yesso scallop)
Pathway
myi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
myi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110441851
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
myi03041
]
110441851
Enzymes [BR:
myi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110441851
Spliceosome [BR:
myi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
110441851
Complex C
U5 SnRNP specific factors
110441851
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Motif
Other DBs
NCBI-GeneID:
110441851
NCBI-ProteinID:
XP_021340800
LinkDB
All DBs
Position
Unknown
AA seq
788 aa
AA seq
DB search
MDVADDRRDRKRERSRSRERKSKRPRSRSRERKRSRSRDRARNRSRSRERDRRSRSRDRG
KRKHKDSKDGKDGKKDSKDSLKKEKDAKKVVPLSLEELLAKKKAEEEALSKPKFLTKEER
AAEALKRRQEAVDLQRKKIEEERQKQKEFLLAGKDSYGDRYDRDRERERERERRERRERE
RQERERDRDHDRDRRGEDTGERVKVIEGKDKEKESEAIKERYLGIIKKKRRVRRLNDRKF
VFDWDAGDDTSQDYNPIYKEKHSIQFFGRGQVGGIDMKQQKVDQSKFYGDLLEKRRTDGE
KEQEKKRVKNVAKKEAKQKWDDRHWKEKSLPEMAERDWRIFKEDYNITCKGGRIPNPIRN
WKESALMKELLDVIDKIGYKEPTPIQRQAIPIGLQNRDIIGIAETGSGKTAAFLIPLIKW
IQSLPKIVRMEDADQGPYAIILAPTRELAQQIEAETMKFSEFLGIRTVAIIGGISREEQG
FKLQQGCEIVIATPGRLIDVLENRYLVLNQCTYLVMDEADRMIDMGFEPDVQRILEYLPV
TNMKPDNDDAEDDEKMLKNFNTTKKYRQTVMFTATMPPPVERLARTYLRRPAVVYIGSAG
RPTERTEQIVHMVSSNMKRKKLLNILEEGIDPPIIIFVNQKKGADVLAKSLEKMGYSAIT
LHGGKGQEQREFALASLKNGSKDILVATNVAGRGIDIKDVSMVINYDMTKSIEDYTHRIG
RTGRAGKTGIAVTFLTQENSAVFYDLKQTIMASPISSCPPELANHPDAQHKPGTVVQKKR
KDETIFLT
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atggatgttgcagacgacagacgtgaccgaaaacgcgaaaggtccagatccagggaaagg
aaatcaaagcgcccaagatcccgaagtagagagagaaaacgatctcggagtcgtgacaga
gcaagaaacagaagcaggagcagagaaagagatagacgcagcagaagtcgtgatcgtggc
aaacgtaaacacaaagattccaaggacggcaaagatgggaaaaaagactcaaaagattca
ttaaagaaagagaaggatgcaaagaaagtagtccctttatcgttggaagaacttcttgcc
aagaagaaagcagaggaggaagctctaagcaagccaaagtttttaaccaaagaagaaaga
gctgctgaagccctgaagagaagacaggaagcagtggacttacagaggaaaaagattgaa
gaggaacgacaaaaacagaaggagttcctgctagcgggcaaagattcttacggtgaccgt
tatgatcgagaccgagaaagggagagagaacgtgaacggagagagagacgagagagggaa
agacaggagcgggaacgtgaccgcgaccacgaccgtgaccgacgcggggaggacacaggt
gaaagggttaaagttatagagggaaaagacaaagagaaggaatcagaggcaatcaaggag
cgttacctgggaatcatcaagaagaaacgacgtgtgcgtcgcctgaacgaccgtaagttc
gtgtttgactgggatgcgggtgacgacacctctcaggactacaatcctatttacaaggag
aaacactccatacagttttttggccgtggccaagtgggaggtattgatatgaagcaacaa
aaagttgaccagtccaaattttatggcgacttgttagaaaagagaagaaccgatggggaa
aaggaacaagaaaagaagagggttaagaatgtcgcaaaaaaagaggcgaaacagaagtgg
gatgaccgccactggaaggagaaatctctgccagagatggctgagagggactggcgtata
tttaaggaggattacaatattacctgtaagggtggtcgtatccctaaccccatcaggaac
tggaaggagtcggctctcatgaaggaactcctcgacgtcatcgacaagattgggtacaag
gagccgacccctatccagagacaagccattcccattggtctacagaaccgtgacatcatt
ggtatcgctgaaactggcagtggtaaaaccgctgctttcctcatccctctaatcaagtgg
attcagtcacttccaaaaattgtcaggatggaagatgctgatcagggtccctatgctatc
atcctggctccgactcgtgaactggctcagcagattgaggcagagacaatgaagtttagc
gagttcctgggtattcgtacagtagccataataggaggtatctcaagggaggagcaggga
ttcaagctccaacagggatgtgagattgtgatagccaccccagggcgtctaattgatgtg
ttggagaatcgttacctcgttctcaatcagtgtacctatctggtcatggacgaggctgac
cgaatgatcgacatgggcttcgagcccgatgtacagcgcattcttgagtacctacccgtt
actaacatgaaacctgacaatgatgatgcagaggatgacgagaaaatgttgaaaaatttc
aacactacaaaaaaatacagacagacggttatgttcacggctaccatgccccctcccgtg
gagcggttggcacgtacctacctgcggcggcccgctgttgtgtacatcggatctgctggt
cgtcccacggagaggacagaacagattgtacacatggtctctagcaacatgaagaggaag
aaacttctcaacatcctagaagagggcatcgaccctccaatcatcatcttcgtcaaccaa
aagaagggcgcggatgtcctggctaagtccctggagaagatggggtatagtgctatcaca
ctccacggagggaaaggccaggagcagagggagttcgctctggctagtctgaaaaacggc
agcaaggatatcctagtggcaacgaatgtggcaggacgtggtatcgacatcaaagatgtt
tccatggtgataaactacgacatgaccaaaagtatagaagattacactcatcgtatcggt
agaactggacgggctggtaagaccggtattgcagtgaccttcctgactcaggaaaattcc
gccgtgttctatgacttgaaacagactatcatggctagtcccatctcgtcatgtccgcca
gagctggccaaccaccccgatgcccagcacaagcctggcactgtcgtacagaaaaaacgc
aaggatgagaccatatttctcacataa
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