Mizuhopecten yessoensis (Yesso scallop): 110442736
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Entry
110442736 CDS
T05079
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
myi
Mizuhopecten yessoensis (Yesso scallop)
Pathway
myi03040
Spliceosome
myi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
myi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110442736
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
110442736
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
myi03041
]
110442736
04121 Ubiquitin system [BR:
myi04121
]
110442736
03400 DNA repair and recombination proteins [BR:
myi03400
]
110442736
Enzymes [BR:
myi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110442736
Spliceosome [BR:
myi03041
]
Complex B
Other components
Prp19 complex
110442736
Complex C
Prp19-CDC5 complex
110442736
Ubiquitin system [BR:
myi04121
]
Ubiquitin ligases (E3)
U-box type E3
110442736
DNA repair and recombination proteins [BR:
myi03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
110442736
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40
WD40_WDHD1_1st
Prp19
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WDR55
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_Aladin
Beta-prop_Vps41
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
Beta-prop_EIPR1
U-box
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_RIG_2nd
NBCH_WD40
PEP5_VPS11_N
Beta-prop_HPS5
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
WD40_RFWD3
eIF2A
zf-Nse
Beta-prop_Nup120_160
Beta-prop_ACSF4
RMC1_N
Beta-prop_VPS8
PUMA_CC
ATG16
Motif
Other DBs
NCBI-GeneID:
110442736
NCBI-ProteinID:
XP_021342159
LinkDB
All DBs
Position
Unknown
AA seq
508 aa
AA seq
DB search
MALCCAISNEVPEQPVISSASGHIYERRLIEKYIKENGTDPMNGEKLAADMLMEVKASPL
VKPRPASATSIPAILKSLQDEWDAVMLHSFTLRQQLQTARQELSHALYQHDAACRVIARL
TKEVSAAREALATLKPQAGVAAPGYTAPQQPSYGAEANPEAAQQPMEEAGMSDEVLQKLQ
DKATLLTAERKKRGKTVPEGLAIVEDIKTYRQLASHTGLHSASVPGILSLDVCLKDTSKI
VTGGNDKNAVVFNKDTEQVMAILKGHTKKVTSVIYHPEEELVFTASPDCTIRVWGVQTAQ
CAQVIRAHEAPVTGISLHATGDYLLSCSTDMHWAFSDLRVGRVLTKVSDPASQHALTCAQ
FHPDGLIFGTGTEDSMIKIWDLKERANVANFPGHQGPITSIAFSENGYYLATSAEDSVVK
LWDLRKLKNFKTLQLSDKYDVRSLCFDQSGTYLAVAGTDVRVYLCKQWQDLVVFNDHTAT
ATGVRFGHNGTFLASASMDRSLKFFGIP
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgtgctgtgctattagtaatgaggttccagaacagccagttatttcttcagcc
tctggccacatctatgagaggcgactgatagagaaatatatcaaagagaatggaacagat
cccatgaatggcgaaaaattggcagcagatatgctgatggaggtcaaagcttctccactt
gtgaagccaagacctgcatcagcaacaagtatcccagcaattctgaaatccctacaagat
gaatgggatgctgttatgttacacagttttacgttgagacaacaacttcagacagccaga
caagaattgtctcacgccctgtaccagcacgatgcagcctgtcgtgtcattgcccgtctc
accaaggaagtctcggctgcaagagaagccttggccaccctcaaaccccaggcaggtgtg
gctgcccctgggtatacagctcctcaacaaccgtcatatggtgcggaagccaatccagag
gctgcccaacagccaatggaggaggccggcatgagtgacgaggttctacagaagctgcaa
gacaaagctaccctacttacagcagaacgtaaaaagagaggcaagactgttcctgaaggt
ttggctattgttgaggatattaagacttacagacagctggcttctcacacgggattacac
agtgccagtgttcctggaattttatctcttgacgtatgtctgaaggatacatcaaagatt
gttaccggtggaaatgacaagaatgctgtggtatttaacaaagacacagaacaggtaatg
gccattctcaaaggtcacacaaagaaggtcaccagtgtcatttatcatccagaagaggag
ctggtgttcactgcctcgccggactgtaccatccgtgtgtggggtgtacagacggcccag
tgtgcccaagtcattcgtgctcatgaggcccccgtcacaggcatcagtctccacgctact
ggtgactaccttctcagctgttccacagacatgcactgggcattttcagatctgcgcgtt
ggcagagttctcactaaagtcagcgatccagcttctcaacacgccctgacctgtgcacag
tttcatcctgacggtttgatcttcggtaccggtacggaggactcgatgataaagatctgg
gatctgaaagagcgagcaaacgtagctaacttcccaggtcaccaggggcccattactagc
attgctttctctgaaaatggttactacttggctacgtctgcagaagattctgttgtcaaa
ctttgggatttgagaaaattgaagaacttcaagactttacaacttagcgataaatatgat
gtgaggtcactgtgctttgaccaaagtggtacctacctggcggttgcaggtactgatgtc
agagtttacctgtgcaaacagtggcaagatcttgtggtatttaacgaccacactgcgact
gcgaccggtgtccgatttggccacaatggtacgttcttggcgtcggccagtatggatcgt
tcactcaagttctttggtataccatga
DBGET
integrated database retrieval system
