Mizuhopecten yessoensis (Yesso scallop): 110443072
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Entry
110443072 CDS
T05079
Name
(RefSeq) fibril-forming collagen alpha chain-like
KO
K19719
collagen type II alpha
Organism
myi
Mizuhopecten yessoensis (Yesso scallop)
Pathway
myi04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
myi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110443072
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
myi00536
]
110443072
Glycosaminoglycan binding proteins [BR:
myi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110443072
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
110443072
NCBI-ProteinID:
XP_021342726
LinkDB
All DBs
Position
Unknown
AA seq
1431 aa
AA seq
DB search
MAFGTVRWSNCILPLLLWVIGTAAQEKTSCSFKGDIVLDGQIVKGQDRCSECVCKSGVIS
CYQVDECNIEETNRQVGDSVREVEASGHQGQPGYSGFVGKTGAMGPTGRNGANGVPGSPG
SPGVPQTQADEAFMHWAQAYPQKAGGYAQGPRYLQANIGPSGPRGPTGPPGQPGPQGLTG
IRGEPGDAGQAGSHGQRGPPGPAGLPGPNGDSGRNGETGPRGTAGRKGPTGPAGTPGIPG
GKGHRGFHGVSGPSGEQGMPGDKGETGPPGPAGPPGVQGSRGMAGDRGRDGNDGQPGLRG
VDGLPGTPGAPGPVGNVGPPGIPGKPGSKGEAGSSGPKGAMGLQGSRGDSGNPGPSGESG
ATGPNGLPGSNGEKGAYGEPGPSGPPGFPGPRGAQGFGGSPGPIGPKGSSGQPGSMGMKG
GSGQRGSPGPIGERGIQGSPGHEGKRGQRGVVGELGAAGPQGERGPPGQRGMPGPTGEPG
NFGEDGSPGQRGRRGNSGPMGEPGRQGTPGLRGSRGPSGMVGLDGIPGRAGNQGVPGNDG
SPGEMGPPGIPGPAGPQGPQGPTGERGTPGNDGNHGGQGSRGPAGDAGPPGEMGPYGPPG
PIGEAGERGPAGNSGQQGYQGAPGLPGPPGESGKPGEQGEPGNQGRDGRPGAPGERGFPG
EQGPPGVSGEPGKAGPEGPTGRAGERGPPGPEGEKGELGPTGVLGPQGQRGKRGAPGEQG
EPGDPGPFGPDGPTGRSGEPGPPGKSGEVGSPGPAAPKGEAGDPGFEGEKGSRGTPGDRG
PIGLAGPDGLTGMPGNAGPNGPKGQQGYPGEKGDQGDAGDAGISGPPGARGLRGLDGAKG
VRGEQGSPGLPGPPGPNGRSGPMGPQGNQGETGDAGVPGGDGIKGTRGENGRMGYTGEAG
AAGTPGEAGQKGSRGEDGDTGPVGPLGPLGPAGERGQPGIQGIRGERGPMGPLGPPGSQG
SPGREGQDGHPGKPGPRGLAGSPGPVGEPGLSGSPGADGTPGISGRVGEQGSDGDMGMPG
PMGLMGFPGPAGPPGSPGPAGDRGVRGENGPDGSRGAQGPRGPPGPYGQQGVGGEKGDDG
LGGDKGDPGLIGMPGLPGPEGPPGDQGRFGPPGPQGQQGPDGQRGHPGRAGNNGEIGSPG
PMGSRGNQGEDGRAGVMGNAGMPGPPGEPGRSIYSQAITGWFSRSSLKGIQGDEPLTDSQ
TNIVAYLNNIGEELQKITHPRGEEDSPYARTCMDLRVLNPDLKNGLYWIDPNGGVTSDKI
QVYCDFRKKTYTCVRPMYDIYENQQLTKEEGEDYALFAHKTIKGRELEYKSNRVQLKFLQ
KVSSKALQTIVYKCRNTVAYFNRAEDAYNKAIKLITFDDTDLGAQGRKKYRYKVVRDGCD
MSSDKWGETVLEVNTKKTERLPIIDIGIADIGKANQEFKVEVGPVCFTHEI
NT seq
4296 nt
NT seq
+upstream
nt +downstream
nt
atggcatttggaacagttcggtggtcgaactgtatactcccattattactatgggtgata
ggaacagcggctcaagagaagacatcatgcagcttcaaaggagatattgttctagatgga
cagattgtgaaaggtcaagaccgctgttcagaatgtgtttgcaagtcaggggtaatctca
tgttatcaagtggatgaatgcaacatcgaagaaacaaatagacaagttggagattcagtc
agggaagttgaggcttccggacaccaaggacagccgggttattcaggattcgtgggtaaa
acaggagcgatggggccaacaggacgtaatggagccaacggtgtgccggggtcccccgga
tcaccaggtgttccccagacgcaagctgatgaggcattcatgcattgggcacaggcctac
ccacaaaaggctggcgggtacgcccagggaccacgatacctgcaggccaatatcggacca
tctggaccccgcggaccaacaggacccccgggacagcccggaccacaaggtctgaccggt
attcggggagagccaggtgatgccggacaagcgggatcacacggccagcgaggaccgcct
gggcctgctgggttacccggacccaatggagattctggacgtaatggcgagactggacca
cgtggaactgccggaaggaagggacccaccggaccagccggaactccaggaattcccggc
ggaaagggacatcggggtttccatggtgtgtcggggccttcaggtgaacagggaatgcca
ggagataagggagagaccggtcccccaggacccgcaggtcctccgggtgtacaaggatca
cgtggtatggccggggacagaggaagggacggaaacgacggacaaccgggtttgagagga
gttgatggacttccgggaactcctggcgctcctggtcccgtcggaaacgttgggccacca
ggtattccagggaagccaggatcaaagggagaggcaggttcctcaggacccaagggagcc
atgggtctacaaggatctcggggagacagtggaaacccaggtccgtcaggagagtccgga
gctacgggtcccaacggtcttccaggaagtaacggcgagaagggagcatacggagagcca
ggaccttccggcccaccaggatttccaggaccacgtggtgcacaaggttttggcggaagt
ccaggacctattggaccaaaaggatcatcgggtcaacctggatcaatgggtatgaaagga
ggttcaggccagcgtggttcaccaggacctattggagaaaggggtatccaggggtcccct
ggacacgagggcaagcggggacaacgtggagtggttggagagcttggagctgcaggaccc
cagggagaacgaggaccaccaggacagcgaggaatgccaggacctactggggagccagga
aactttggagaggatggatcccccggacaaaggggacgccgcggaaactctggaccaatg
ggcgagcccggacgtcaaggaacacccggattacgtggaagcagaggaccatcaggtatg
gttggattagatggaattccagggcgtgcaggaaaccagggtgtacccggaaatgacgga
agccctggagaaatgggacctccaggtatccccggaccagccggacctcagggaccacag
ggacccacaggagagcgaggaaccccgggtaatgacggtaaccatggtgggcagggtagc
cgaggtccggccggagatgctggaccccctggagaaatgggaccatacggacccccgggc
ccaatcggagaagcaggagaaagaggaccagctggaaactccggacagcaaggctaccag
ggagcaccaggattgcctggaccacctggtgagtcaggaaaacccggagaacaaggagag
cctggtaatcaaggccgagacggacgtcccggagctcctggagagagaggtttcccaggt
gaacaagggcctccaggagtatctggagaaccgggaaaggcaggaccagagggcccgacg
ggaagggcaggagaaaggggaccacccggaccagaaggtgagaagggagagctcggacca
accggagtactgggacctcaaggtcagcgaggaaaacgtggagcaccaggagagcaggga
gaacccggcgaccctggtccttttggccctgacggacccactggccgttccggagagcct
ggaccacctggtaaatctggagaggtcggatcccctggaccagccgcaccaaagggagag
gctggagacccaggattcgaaggggagaaaggttcaagaggaacacctggagatagaggt
ccgattggactcgcaggacctgacggattaacaggaatgccaggaaacgcaggaccaaat
ggtccaaagggacagcaaggatatcccggagaaaaaggagaccaaggagatgctggtgat
gccggaataagcggaccacctggagctaggggtttaagaggattagacggcgctaagggc
gtgcgaggagagcaaggttctcctggtctgcctggtccgccaggaccgaacggccgttca
ggcccaatgggaccccagggcaatcagggagagactggggatgcaggcgtgcctggtggt
gatggaatcaagggaactcgtggagagaacggacgaatgggctatactggtgaggctgga
gctgctggtacaccaggagaagcaggacagaagggatcccgcggggaagacggagatact
ggtcctgttggaccactagggccactgggaccagccggtgagagaggccagcccggtatc
caaggaattaggggagagaggggtccaatgggacctttaggaccaccgggcagtcaagga
tcccccggacgtgaaggccaggacggacatccaggtaaacccggaccaagaggattggct
ggatctcctgggccagtaggagaacctggtctctcgggatcccccggtgcggacggcaca
cctggtatttcaggcagagttggagagcaaggatcagatggtgacatgggcatgcccgga
ccgatgggactcatgggattccccggccctgccggaccacccggatccccaggacctgcc
ggagaccgaggagtcagaggtgagaatggaccagatggatctcgaggtgctcaggggcca
cgtggaccaccaggcccatacggacaacaaggagtgggaggagaaaagggagatgatggt
ctcggaggagacaagggagaccctggtctgattggtatgcctggacttccaggaccagag
ggaccaccgggtgaccaaggacgttttggccctccaggcccgcagggacagcaggggcct
gatgggcaacgtggacatcctggtagggcaggtaacaatggtgaaattggatcaccagga
ccaatgggatcacgtggaaaccagggagaagatggccgagccggtgtgatgggaaatgct
ggtatgccaggacccccaggagagccgggacgttccatctacagccaggcaatcactgga
tggtttagccgttccagcctgaagggaatacaaggagacgaaccattgactgattcacaa
accaacattgtggcctatctaaacaacattggagaagagctgcagaaaattactcaccca
cgtggtgaagaggattctccttatgctaggacttgcatggacctccgcgtgctgaaccca
gatttgaaaaacggactgtattggattgatcccaatggcggtgtcacctcagacaagatc
caggtctactgtgatttccggaagaagacatacacctgcgttaggccaatgtatgatatc
tatgagaaccagcaattaacaaaagaggaaggagaggattatgctttgtttgcccataag
acaatcaagggcagagagctggagtacaagtcaaacagggttcagcttaagttcctgcag
aaggtcagctccaaagccctccagacgattgtgtacaagtgtaggaacactgttgcctac
tttaaccgggccgaggacgcctacaacaaagctatcaaacttatcacctttgacgacacc
gaccttggtgcccagggcaggaagaagtacagatataaggtcgtcagggatggttgtgac
atgtcttccgacaagtggggagagactgttctcgaggttaacacaaagaagacagagagg
ttgccaatcattgatataggcatcgcagatattggaaaggcaaaccaggagttcaaggtt
gaagtggggcctgtgtgtttcactcacgaaatttaa
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