Mizuhopecten yessoensis (Yesso scallop): 110443640
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Entry
110443640 CDS
T05079
Name
(RefSeq) focadhesin-like isoform X1
KO
K27498
focadhesin
Organism
myi
Mizuhopecten yessoensis (Yesso scallop)
Brite
KEGG Orthology (KO) [BR:
myi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
myi03019
]
110443640
Messenger RNA biogenesis [BR:
myi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110443640
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Focadhesin
DUF3730
INTS7_N
Motif
Other DBs
NCBI-GeneID:
110443640
NCBI-ProteinID:
XP_021343658
LinkDB
All DBs
Position
Unknown
AA seq
1794 aa
AA seq
DB search
MFKMEDVKKRLAFGNPAVQTQAVWRLYTEITKKASTLGRIDSKTPECVEIKLLWEYCGDE
VTVISRSACQVLVRLVTDGNADFLFILNGLLNQVPSARSLLGIVSGIRELLVLQIALVEN
QDQLYSCPYRLRTPPHPFITILTNRPEAWPLLQHQVYSLCCHGNKSVRQNAMEMLAPFLK
FVLVEPQQSSQYQPMKTSLERVLMQVIGQSQDQESARGILRFLTNILPYFQIRESQDLAK
TTQFVTEIILQCLSYCRADKCQRELRALAEFGLSLHHQGVLKGQGVTSLMDALMKVASSS
PEVMASDQNLITVATTLLSCSVDQVLSLLKMCKLILETDSRVISPVGAGMLVLPVLQILA
TPKSELIGRQLSVLHSLAGEIILNIEKKRKIPYEMVSDQDIKIGLTTASYQGQNFANWTK
VFSMQQEQAVSWMSGLMSSLKVTNHIPFSLTNLVSALLTMFRNDREASLALKTLTLIANR
DNTQAPWFLPLMLYQLGSESTPSVRFDILMTIPKLATHKVCVGPILKTIQSFGTFPAMKG
TYLQMLTDLWKIQDRCFPQLLKEIMESPKGYSLEVLLVKAKAIRDVCKLRPEQHGTDMLG
PLSDILTLCPGEEEAAVSSLALEGLYFLCEAEVINILSAWSVLADSLVRDSRPAVVEKIC
ELFSLVPSLEEQTADYEKFCEDAVMNLWLYTNSDDTKVCGAAFQALAMYRADQFKVSHLP
RHITEDLRQQAEHLSNEEEREVSVDELFPQVPALCYTRLLKTLPKEVLPDYEAFLAAMLA
KEVADLPRGIYHSSLWRQSAATNQSKAIGSIPAFITGHYYKTKQPGLRPGLAVSTLFCYD
PPLEVGRDGRPRKHYIITHGKNFQQMFKTLLQEVPIQPSEWHRSMVIPQAWTSFVDRLFT
AMVEGRRAEIELQLKRDHVSEDEARLKKQVAWLWVRDTLVDVIKISSRGNPTMQSNSIYA
LAGLAVTVNRHGNGLDTEAAKAAEDSSEFMSPPHWLTVVIDTIISLMDVTFTPKGKLIGL
CQQLSVDNRLPASLLAQASASVALSQVVPALITLDVDRIFMIINFLLSWLPGQPGVPESP
VLQFHGGLGLGMFLSRLLEEHFADISGTKGMLQIWKSFDKLEECCLAPNVKNRSGAILGL
GMAVCAMCEEGKTESRAHVVSIYDKLLTLCDELDPLDNIFQAVSVCVACIAGAAFSSNIL
LVTRVDTAVDKLMTTHSNHPQVTGVSLALGMLCYSLSRAGHPGIGDVRVRLFGTWMKAVS
SEGTAPMEKVAILNGLMALIGSERTLIPVQSGSVSSSDLNADDVIKVASQIVTSGNDLGI
QNNAAWMLGHLYLSACAVADTRASVPSTYGYLPEKSFLRAIVDFVSEAGKAGAETVPKEQ
VEVALTSLQEEVEQALPPVNWAGVLTPMMRMGFGDKVRRLSVKLAVKQSGSAPTAAMFLT
TWMTLPLLSTLDEGCQIVLYDALPKLICSIAPTAIGSLLGVGSSEPYIGQDGDTSPALVH
VLAGLTNALKVNDPPEAVTAVLYKAVATFYSKLSSCTQVPVLCLVADCLGNLPDDLFDKI
TGEDFLYDASHSKGCLVRCYLVVQGKQPITILNSCIDATFNNKRCNHSLISTYLQHCFYQ
VTQSRSEFTGVIPKLHWLVELLGHVRNIATGATTLSDDITDKTQVMDLAVDIIAAVLCLW
MSTSSACVLSVTTQLLTCPDISSSNTQDPKLPWKPSVSPRQVLPAYITGIQSEPWDQVLP
KVVDCWTTLLSRPDDIISRKTKSSLQDSLQILRHSTTFRKPTVWTEIYDTVQVK
NT seq
5385 nt
NT seq
+upstream
nt +downstream
nt
atgttcaaaatggaagacgtaaagaagagattggcttttggtaaccctgctgtacagact
caggcggtgtggagactctataccgaaataacgaagaaagcatccacactcggacgaatt
gattctaaaacaccagagtgtgttgagataaaacttctttgggaatactgtggtgatgag
gtgactgtgatctcaaggtcagcctgccaggtcttggtgcgtttggtaaccgacggcaat
gccgacttcctgttcattctcaatgggctcctgaaccaagttccgtcggccaggtccctg
ttgggaattgtaagcggaatccgtgaacttcttgtcctacaaattgcacttgtggaaaat
caagatcaactgtactcttgtccctaccgtttaaggacacctcctcaccccttcatcacc
atcttgacgaaccgtccggaggcatggcctctcctacagcaccaagtatacagcctctgt
tgtcatggaaacaaaagtgtgcgacagaacgccatggagatgctggccccctttctgaaa
tttgtactggtggaaccgcagcaaagcagccaatatcaaccaatgaaaaccagtctagag
agagtcctaatgcaagtcattggccaatcacaggaccaggaatctgccaggggaatactc
cgtttccttacgaacatcctgccatactttcagattcgggaatctcaagaccttgccaag
accactcagtttgtgaccgagatcatactgcagtgcctgtcatactgcagagctgacaaa
tgtcaaagagagttacgggccctagctgagtttggtttatccctccatcaccagggggtg
ctgaaaggtcaaggggtcacatccttgatggatgccctgatgaaagtagcatcatcttct
ccagaggttatggcttctgaccaaaacttaatcaccgtggcgaccactcttctttcgtgt
tccgttgatcaagtgctgtcactgctcaagatgtgcaagctgatccttgagacagacagt
cgtgtcatcagtccagtcggagcggggatgttggtcctgcccgttctccagatcctggcc
acacccaagtctgagttgattggtcgacagctcagcgtccttcacagtctagcaggggag
ataattctaaacatcgagaagaaacgaaagattccttatgaaatggtatcagaccaagat
ataaagattggtttgaccacagctagttaccaaggtcaaaactttgccaactggacaaaa
gtcttctctatgcagcaagagcaagcagtgtcctggatgtctggtctgatgtcatcgctc
aaagtgaccaatcacatccctttctccttgactaatctggtgtctgcattgttgaccatg
ttcagaaatgatcgtgaggccagtctggccctcaagaccttgactctgatagccaacagg
gacaacactcaggctccatggtttttgccgctaatgctgtaccagctaggaagtgagagc
actccgtctgtcagatttgatatcctgatgacgatacccaagcttgctacacataaggtg
tgtgttgggcctatcctgaaaactatccagtcctttggcacgtttccggcgatgaaggga
acttacctgcagatgttgacagacttatggaagatccaggaccgatgcttcccacaactg
ctgaaggagatcatggaatcaccaaaaggatactccctggaagtattgctggtcaaggca
aaggccatccgggatgtatgcaaattaagaccagaacaacacggtacggacatgcttggt
cctctatcggacattctcaccctctgtcctggagaggaagaggcagctgtatcgtctctg
gctctggaaggactttacttcctatgtgaagctgaggttattaacatcctgtctgcctgg
tccgtgcttgctgacagtctcgtccgggattcacgacctgcggtagttgaaaagatatgt
gaactgttttcacttgtaccatcattggaagaacagactgcagattatgagaaattctgt
gaagatgctgtgatgaatttgtggctgtataccaatagtgatgacacaaaagtgtgcggg
gctgcattccaggccctggccatgtatagggcagaccagttcaaggtgtcccatctcccc
agacatattacagaggatttgaggcagcaagccgaacacctatcaaatgaggaggagcgt
gaagtgtctgttgatgaactgttcccgcaagtaccagccttgtgctacacccgtcttctg
aagactttaccaaaagaagtcctaccagactatgaagcatttttggcagccatgttggca
aaggaggtcgctgatttaccaagagggatataccactcgtcgctatggagacagagtgca
gcaaccaatcagagcaaagctattggatctatcccagcattcattacgggtcactattat
aaaaccaaacagccaggattaagacccggtttggcagtgagcactctcttctgttacgac
ccgccactagaggtcggcagggatggtcgtccacggaaacactacatcatcacacacggc
aaaaacttccagcagatgttcaagacattgttacaggaggttccaatccagccatcagaa
tggcacagaagtatggtgatcccgcaagcctggacgtcgtttgtagacagactttttacg
gctatggtagagggccgccgggcagaaattgagctccaactgaaacgagaccatgtgtct
gaagatgaagccagactgaaaaagcaggtggcctggttatgggtccgcgacaccttggtg
gatgtgatcaagatcagctccagaggaaatcccacaatgcaaagcaactctatatacgcc
ctagcgggattggctgtcaccgtgaatcgccatggcaatgggctagatactgaggctgcc
aaagcagctgaggacagcagtgaattcatgagtccccctcattggcttacggttgtcata
gatacgatcatatctctgatggatgtcactttcactccaaaaggaaagctgattggtctc
tgtcaacagttgtcggtggacaatcgtttgccagcaagcctacttgcacaggcatcagct
tccgtcgccctgagtcaagtcgtaccagcactcatcacgctggatgttgacagaatcttc
atgatcatcaacttcctgctttcgtggttgccaggacaaccaggtgtcccagaatcccct
gttctacagttccatggtggacttggattggggatgttcctgtcacgacttctagaggaa
cacttcgccgacatcagtggaacaaagggtatgttacagatttggaagagctttgataaa
ttggaagagtgttgccttgcacccaatgtaaaaaacagatcgggagctatcctcggcctg
ggtatggctgtctgtgcaatgtgtgaggaaggaaagacagaaagtcgagctcacgttgtg
tctatctacgacaaactgctgaccttgtgtgatgagcttgacccccttgacaacatattc
caggcggtcagtgtgtgcgtggcctgtattgcgggagcggcatttagttctaacattctc
ctggttaccagagtggacacagcagtggacaagctgatgaccactcactcaaaccatcca
caggtaactggagtatctctggccctgggcatgctctgttacagtctcagtagggccggt
caccccgggataggggatgtgagggtcaggctgtttggtacctggatgaaagctgtctca
tctgaggggaccgcacccatggagaaggtagccatattgaacggactgatggctttgatt
ggctcagagaggacacttataccggtccagagtggctcggtcagcagcagtgacctcaac
gctgatgatgtcatcaaggtcgcatctcagattgtcaccagtggaaacgaccttggcatt
cagaacaatgcggcgtggatgctgggtcatttgtatctgtcagcatgtgctgtagcagac
acaagagctagtgtaccctctacctacggttacctgcctgagaaaagtttcctaagagct
atcgtagactttgtgtctgaggctggtaaagcaggagcagaaactgtgccgaaagaacaa
gtagaggtggccttgacctcgctacaagaggaagtggaacaggcactgccccctgtcaac
tgggcaggggtgttaactcctatgatgaggatgggttttggtgataaggttagacgtctg
agtgtaaagttggcggtaaaacagagtggatcagcccccacagcggccatgttcctcacg
acctggatgaccttgcctttgctcagcacactagacgagggatgtcagattgtcctctat
gacgccttaccaaaactgatttgctcgatcgcaccaacagccatcggctcgctcctggga
gtaggatcaagtgagccatacattggccaggacggggacacaagtccagctctagtccac
gtcctagcaggactgaccaacgctctaaaggtcaacgacccaccagaggcagtgactgct
gtcctctacaaggctgtggcaacgttctactccaaactttcatcatgtacacaggtgcca
gtactgtgtctggtagccgattgccttggtaacctgcccgacgatctgtttgacaagata
actggcgaggatttcctttacgacgcgagtcattccaaaggctgtttggttcgctgttac
ctggtggttcaagggaagcaacccatcaccattctcaacagctgtattgatgctaccttc
aataacaagagatgcaaccattctttgatatctacatacctacagcactgcttctatcag
gtgacccagagtaggtcagagttcacaggggtcattccaaagttacattggctggtagaa
ctcttgggacatgtccgtaacatagcgacaggggccacaactctgtcagacgatattaca
gacaaaacacaggtgatggatttggctgttgatataattgctgcagtcctgtgtttgtgg
atgtccacttcctccgcgtgtgttttaagtgtcactacacaattactgacttgtccagat
atatcgtcctccaacacacaagatcctaagttaccatggaaaccaagtgtgtctccaagg
caggtgttacctgcctacatcactggcatccaatcagagccctgggatcaggttcttccg
aaggttgtggactgttggaccacactgttgtcaagacctgatgacatcatcagtaggaag
accaaatcatcactacaagattccctgcagattttgagacattctaccaccttcaggaag
cccaccgtctggaccgagatttatgatactgtgcaagtgaaataa
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integrated database retrieval system