KEGG   Mizuhopecten yessoensis (Yesso scallop): 110445362
Entry
110445362         CDS       T05079                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
myi  Mizuhopecten yessoensis (Yesso scallop)
Pathway
myi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:myi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110445362
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:myi03041]
    110445362
Spliceosome [BR:myi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    110445362
 Complex C
   U5 SnRNP specific factors
    110445362
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Beta-prop_EIPR1 Beta-prop_IFT122_1st Beta-prop_EML Beta-prop_TEP1_C NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_SPT8 WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_DCAF4 Beta-prop_SCAP WD40_RFWD3 Beta-prop_RIG_2nd eIF2A Ge1_WD40 Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_HPS5 WD_LRWD1 Beta-prop_NWD2_C Cytochrom_D1 Beta-prop_RIG_1st PEP5_VPS11_N Beta-prop_VPS8 Nbas_N WDR54 Beta-prop_NOL10_N
Other DBs
NCBI-GeneID: 110445362
NCBI-ProteinID: XP_021345609
LinkDB
Position
Unknown
AA seq 346 aa
MDYKRKLTDGALVPSKKPRTDMVVDLISQENALLQTGPPRLSNLEAPIMLLTGHEGDIFT
TKFSPDGQLLASSGFDRLIYFWLVYGECENIAVLKGHTGAVMELQFSTDGNTVFTAATDK
TVALWDVEVGERIKKLKGHQSFVNSVNVARRGPQLICSGSDDGTIKLWDSRKRGVIQTFQ
STYQVTACTFNDTAEQILSGGIDNDIKVWDLRKNDMLYRLRGHADTVTGMELSPDGSYLL
SNSMDNTVRVWDIRPFAPQERCVKILQGHQHTFEKNLLKCAWAPDGSKVSAGSGDRYVYV
WDTTTRRILYKLPGHAGSVNDVDFHPTEPIIASCSSDKKIFLGEIE
NT seq 1041 nt   +upstreamnt  +downstreamnt
atggattataaaagaaagctcacagatggggccttagtgccgagtaaaaagccaagaacc
gacatggtggtcgatttaataagtcaagagaatgccctgttgcaaaccggcccaccaaga
ctttctaaccttgaagcccccatcatgttactgacgggccatgaaggtgacatattcact
actaaattttctcctgatggacaacttcttgcctcctctggatttgacaggctgatttat
ttttggcttgtgtatggagaatgtgaaaatattgcagtcctgaaaggccacaccggggct
gtgatggagcttcagttttccaccgatggaaacacagtgtttacggccgccacagacaaa
actgttgcattatgggacgtagaggttggtgagcgcatcaagaagttgaaaggtcaccag
agttttgtgaattcagtaaacgtggccagacgaggtccacagctaatctgtagtggaagt
gacgacggtacaataaagttgtgggactcgaggaagcgcggtgtaatacagacgtttcag
agtacgtaccaggttacagcatgtaccttcaacgacacagccgaacaaatcctctccggg
ggaatcgacaatgacatcaaggtttgggaccttaggaagaatgacatgctgtaccgactg
cgaggacatgccgacacagtgacagggatggagctgagtcctgacggatcctatctcctc
tccaactccatggacaacacagtgagagtgtgggacatcagaccgttcgcgccacaggag
cgatgtgtgaaaatattacagggacatcaacatacatttgaaaagaatctcttgaaatgt
gcttgggctccggatggaagcaaggtgtcggctgggtcaggtgaccgttacgtttacgta
tgggacacgaccacacgtcggatcctctacaagctgcctggtcacgctgggtcagtgaac
gacgtggatttccacccaacagaaccaatcattgcttcctgttcgagtgacaagaagata
ttcctaggagagatagaatga

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