Mizuhopecten yessoensis (Yesso scallop): 110446234
Help
Entry
110446234 CDS
T05079
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
myi
Mizuhopecten yessoensis (Yesso scallop)
Pathway
myi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
myi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110446234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
myi03041
]
110446234
Enzymes [BR:
myi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110446234
Spliceosome [BR:
myi03041
]
Complex C
Other components
Step II factors
110446234
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
T2SSE
nSTAND3
ResIII
Flavi_DEAD
AAA_14
SRP54
AAA_16
Motif
Other DBs
NCBI-GeneID:
110446234
NCBI-ProteinID:
XP_021346949
LinkDB
All DBs
Position
Unknown
AA seq
1239 aa
AA seq
DB search
MSEIVEPDDDPSLHRLEGSTGREKGGLIIKKKKSNHEFTKPEISSPRVSLLGLDRLAAAK
RLGDASEEDQRKKSRIMSYQDDDDSDSDDEPDENNDRSKKHKGHKDRNYRQSKIETPSHP
GGVSREAKDRQKQRHRDRGVYASSSSKDKDRRERREDRHSRDRDRHRYRDKDRRPRRDDR
SERSDRSHRSDRDSERSRCSYREWEETPERFRDAPPTPDFGGKDTPSVYGWDDDDVTPLK
RSSWDLLTPRSNTSSDNENSVRSNRSSFDKRSKRGPKETPLPTPTFKYNDWMDNKKRIQY
TPKDGGSRRDTDGRRDIEFESEEDRLDWEREQKRLDREWYNMDEGYDDDNNPFSGTSEEY
TRKKEEEMEKKKKKRMTARQRQINKDIELWETNRMLRSGVITKTDYDEDFDDENEAKVHL
LVHNIVPPFLDGRIVFTKQPEPVVPVKDPTSDLAQVARKGSLVVRKFREQKEKRKAQQKH
WEVAGTRIGDIMGVKKKEEEGDKLDAKGELDYKTDHKFADLLQDKTEAVSDFAKAKTLSE
QRKFLPIYAVRNELLNVIRDNSIIIIVGETGSGKTTQLTQYLHEDGYTNYGMVGCTQPRR
VAAMSVAKRVSEEIKCKLGEEVGYAIRFEDCTTEKTIIKYMTDGILLRESLRESDLDHYS
AIIMDEAHERSLNTDVLFGLLREVISRRHDLKLIVTSATMNATKFASFFGNVPVFEIPGR
CFPVELFFSKNTVEDYVDSAVKQAMQVHLQGMDGDLLIFMPGQEDIEVTCELISERLGEL
DDAPPLAILPIYSQLPSDLQAKIFQKAPDGVRKCVVATNIAETSLTVDGIMFVVDAGYCK
LKVFNPKIGMDALSIYPISQANANQRSGRAGRTGPGHCYRLYTQRQYKNEMLTATVPEIQ
RTNLANVVLLLKSLGVQDLLQFHFMDPPPQDNILNSMYQLWILGALDNTGSLTPLGRQMV
EFPLDPALSKMLIISLEMCCSAEILIIVSMLSVPAIFYRPKGREEDSDAAREKFQVPESD
HLTFLNVYEQWKRNAYSASWCNEHFIHIKAMRKVREVRQQLKEIMDQQKMELISTGNEWD
IVRKCICSSYFHQAARLKGIGEYVNVRTGMPCHLHPTSALFGMGYTPDYIVYHELIMTSK
EYMQCVTSVDGHWLAELGPMFYSIKDASKTRQERKKVAVEEMNAMEEEMKRAEELIRARK
EHQDAKSLTGKGTNIATPGLKDPATPAHTPRRTPAKFGI
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaattgttgaacccgatgacgacccgtcgttacacagattagaggggtcaact
gggagagagaaaggaggactaattatcaaaaagaaaaaatcgaatcatgaatttacaaaa
ccagaaatatcaagcccaagggtatctctgttaggtttggatagattagcagctgctaaa
cgtctgggagatgcgtcggaagaggatcagaggaaaaaatctagaataatgtcttatcaa
gacgacgatgacagtgatagtgatgatgaacctgatgaaaataatgacaggtctaaaaag
cacaaaggtcataaagacagaaattaccgtcagtctaaaattgagacgccatcacaccca
ggaggtgtgagcagggaggctaaagacagacaaaagcaacgacacagagaccgaggagtg
tatgcctctagttcatccaaagacaaagacagaagggagcggagggaagacagacatagc
agagaccgagatcgccatagatatagggacaaagatcgcagaccaagaagggatgacaga
agtgagcgtagtgatcggagtcatcgaagtgaccgtgactcagagaggagtcgttgtagc
tacagagaatgggaagagactccagagaggttcagagatgcacctccaactcctgacttt
ggcggcaaagacactccttctgtgtatggttgggatgatgatgacgtgacgcccctcaag
cgatcctcttgggatctcctgacacctaggtcaaacactagcagtgacaacgagaacagt
gtccggagcaatcgctcatccttcgataagagaagcaagcgaggtcctaaagagactcca
ctaccaaccccgactttcaagtacaacgactggatggacaacaagaagaggatacagtat
acaccaaaggatggtggcagcaggagagacacagatggccgtcgtgatattgaatttgag
tcggaggaggataggctggattgggagcgtgaacagaagaggcttgaccgtgagtggtac
aacatggatgaaggatacgatgatgacaacaaccccttttccggcacttcagaggagtac
acacgcaagaaggaagaggagatggaaaaaaagaagaaaaaaaggatgactgctagacaa
agacagatcaataaggacattgagttgtgggaaacaaacagaatgcttagaagtggagtt
atcacaaagactgattatgacgaggattttgatgatgaaaacgaagcgaaagtgcatctt
ctagtccataacattgtgccaccatttcttgatggacgtattgttttcaccaaacaacca
gagccagtcgttcctgttaaggacccgacatcagatttagctcaagtggccagaaaggga
agcttggttgtcagaaagttcagggaacagaaggaaaaacggaaagctcagcagaaacac
tgggaagtagcgggcacaaggattggagatatcatgggggtaaagaagaaagaagaggag
ggagacaagctggatgcgaaaggggaactagattataaaactgaccacaagtttgcagat
ctattacaagataaaactgaagcagtcagcgactttgccaaggcaaaaacactgtcagaa
cagaggaaatttctgcccatatacgcagttcgaaatgagctgttgaacgtgattcgtgat
aacagtatcatcatcattgttggagaaaccgggtctggaaagaccactcaacttactcag
tatcttcatgaggatggctacaccaactacggaatggttggctgcacacagcctcgtcga
gtagccgccatgtctgttgccaagcgtgtctctgaggagataaaatgcaagctgggtgag
gaggtcggatatgccatacgatttgaggattgtaccactgagaaaaccataattaagtac
atgacagatggtatcttactgagggagtcactacgggagtcagatttggaccattacagc
gccattatcatggacgaagctcacgagagatcgctcaacacagatgtccttttcggcttg
ttacgagaagtcatttcaaggcgtcatgatttgaagttgattgttacctctgccacaatg
aatgcaaccaagtttgcaagcttcttcggcaatgtgcccgtttttgagatccctggcaga
tgctttcctgtggaactcttcttcagcaaaaacacggtcgaggattacgtggattcggcc
gtaaaacaggcgatgcaggtccacctgcagggcatggacggtgatttactgatcttcatg
cctggacaagaagacattgaagtgacgtgtgaacttatatcagaacgtctcggcgagcta
gatgatgctcccccattagccatcctgcccatctactcccaacttccgagtgaccttcag
gccaagatattccagaaggctccagatggtgtgagaaagtgtgtggttgctacgaacatt
gcggagacttcactcacagttgatggtattatgtttgtggtggatgctggatactgcaaa
cttaaagtattcaaccctaagattggtatggacgccctgtcaatctaccccatcagtcag
gccaatgctaaccagagatcaggcagagctggaagaacaggcccaggccattgctatcgt
ctgtacacccagcgacagtacaagaatgagatgctgactgccacagtacccgagatacag
aggacgaacctggctaatgtggtcctcctcctaaagtccctgggagtgcaggacctgctc
cagttccacttcatggatcctcctcctcaggacaatatcctgaactccatgtaccagtta
tggattcttggtgctctagacaatactggatccctgacacccctcggccgacagatggtg
gagtttccactggaccccgccttgtctaagatgttgattatctcccttgaaatgtgctgc
agtgcagaaattctgatcattgtgtccatgctgtcggtaccagccattttctaccgccct
aaaggtcgggaagaggactctgacgcagccagggagaagttccaggtcccggagagtgac
cacctcaccttcctcaatgtctatgagcagtggaaacgaaatgcatattcagccagctgg
tgcaatgaacacttcatccatatcaaagccatgagaaaggtgcgggaggtacgtcaacaa
ctgaaggagataatggaccaacagaagatggagctcatctctaccggcaatgaatgggac
atcgtaaggaagtgcatctgttcttcttacttccatcaggccgccaggctgaagggcata
ggcgagtatgtgaacgtgcggacaggaatgccatgccatctgcatccgaccagtgccttg
tttggtatgggctacacccctgactacattgtgtaccacgaactcatcatgacatccaag
gaatacatgcagtgtgtaacctctgtggacggtcactggctagccgagctgggacctatg
ttttacagcatcaaggatgcttccaagactagacaggaaagaaagaaagtggcagtggag
gaaatgaatgcaatggaggaagaaatgaaacgtgcagaggaattaattcgtgctcggaaa
gaacaccaggatgctaaaagccttactggcaaaggcacaaacatagctacacctggtctg
aaagaccctgctacacctgcacacacacctcgaaggactcctgcaaagtttggcatttga
DBGET
integrated database retrieval system
