Mizuhopecten yessoensis (Yesso scallop): 110447947
Help
Entry
110447947 CDS
T05079
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
myi
Mizuhopecten yessoensis (Yesso scallop)
Brite
KEGG Orthology (KO) [BR:
myi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
myi03041
]
110447947
Enzymes [BR:
myi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110447947
Spliceosome [BR:
myi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
110447947
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
R3H
DEAD
HA2_N
Ank_2
nSTAND3
NPHP3_N
AAA_19
DUF913
ATPase
T2SSE
AAA_22
AAA_23
AAA_16
Motif
Other DBs
NCBI-GeneID:
110447947
NCBI-ProteinID:
XP_021349616
LinkDB
All DBs
Position
Unknown
AA seq
1560 aa
AA seq
DB search
MAANLKYGRSELPPGGSFARVMQRGDGSSPRPSSTSSSQSFHSFASSEDYQDHGPRPGQD
ICIGEEVKISIHLAMERFRMNESQKELEFPSSLTATERAYVHKLCEGNGLKSKSKGKASG
RYITITKREGRLSSQSSASFYLARNSRQQILNLLQRYPVSNKERQELIPRVDRNQPSDVG
KELNKTTIGKLNNGVAQVPPPRGDSDLNAFREGLPVFKHRQDVLDALNNNRVILISGETG
SGKTTQVPQMILDDCCNKNKPCRIFCTQPRRIAALSIAERVALERGEKIGQTVGYQIRLE
SKVSPKTLLTFCTNGVLLRTLMNGDASFGGVTHVIIDEVHERDRFSDFLLASMDELMTKH
PHLKIILMSAALNTQLFVQFFNNCPVVHIPGTLFTVKEYFLEDVLKWTKYSNKAMEKAKR
EKGTVTKQQEQLEELCAKMSIGITYTEMEDHSMAGKQSHSDTDSAPNNTNEDKSELPDWI
IKEMDQFLTDIFLMGSEETFAQLVHLIMSENVSVDYQHSETGVTPLMVTTARGMNDEVEQ
LLNLGANVNLHLPNGWTAIDWAKRFERNDILEMLEALMLSNDVGPSGDSLAEAGNQLLTD
AEKDMLSLYQSCFDDEKVDIQLILNLIYQLMSNYSDGAILVFLPGYDDIVGLRDLIAEDS
FFHKYKYLLYTLHSAMQSNDQRRVFKTPPPGVRKIILATNIAETSITIDDVVFVIDAGKV
KEKTFDALLSVTMLKSNWISKASALQRKGRAGRVRPGLCYHLFSKVRYSNLMDFPAPEIL
RYPLQELCLHTKLLAPKTCSIADYLSKCPEPPTFLLTRNAIHLLKQIDALDTCEDLTELG
HHLADLPVEPCLGKMVLYSVVLKCLDPVLTIVCTLAYKDPFVLPSQPNMKREASMSRRKF
AADTCSDHMALLRAFQAWQRARTDGWERSFCDKNYLSSACMEMIVGMRTQLLGQLRASGF
VRARGGGDIRDLNTNSENWAVVKAALCAGSYPNLLRVDRQKARLATQKESNVFFHMSSVV
SQIPSSKKTQKSQFIKSLRSDWLFYQEMTRFQRHPMVRTCTMVSPITVAVFAGPAKLSPD
AVKDRQLNRNFGMRGEFGSEESDSEGEDKEDNRKTTLQLDEWLGFKLDNETTSIVLQLRQ
KWNSLLLRRMRSPSKTWSQLDESVVRTIVNILTNEEQTMGLQQPAGIGQRPRPMTAESIM
SGGGGKGNFDFVTPPRKNFQFQQKSSSGVDTASSSSSNSPSANTSHRGSQSSTPSMSPGP
ASPSVGVNHSSSQPTSFFVMKCNNQSKVDLSMNKGVWATNKSNNKKLNSVFQEGNTVYLV
FSVQGSGHFQGYAKMKSEFVDKKVQDSSYHGLDYCCDVEWIKRANLSFQSTLQLLNPWDD
NRKVQTSRDGQEIEPHVGETLIKLWDKYLAHQGKSSPSASNKPQNAGKRGAFHGPASPEG
PGSYQSIGGDHSDYSSHGTRNFYNRQSQGGYQDQGNYGGYQVNEGSHNGHRGQGQRGKSS
GRSPINQGNPFDNYSGYHTGGYQDNGVAPGTEYGSYSYHQRGQGSGGHRRGNHNRSGNRR
NT seq
4683 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgaacttgaagtacggcagaagtgaacttccaccgggaggttcctttgccagg
gtgatgcagcgaggtgacggttcctcccctcggccgtccagtactagtagttcccagagt
ttccatagctttgcctccagtgaggactaccaggaccatgggcctcgacctggccaagat
atttgtattggggaggaagtcaagatatctattcatttagctatggaacgatttcgtatg
aatgaaagccaaaaagaacttgagtttccgtcgtcactaacagccacagagagagcctat
gtccacaaattgtgtgaaggaaatggcttgaaatcaaagagcaaaggcaaggcaagtgga
agatatatcactattactaaaagagaagggaggttatcttcccagtcatctgcctcattt
tatctggcgagaaacagtcgtcaacaaattctgaatctcctgcagagatatcctgtctca
aacaaggaacgtcaagagttgattccgagagttgacagaaatcaaccaagtgatgttggc
aaagaactgaacaaaacaaccattggcaaactcaataatggagttgcacaggtgccccct
cctcgtggtgactcagacttgaatgccttccgggaaggattgcctgtcttcaagcacaga
caggacgttcttgacgctctcaacaataaccgggttattttgatatctggtgaaaccggg
tcaggaaagaccacacaggtcccacagatgatactggatgactgttgtaacaagaacaaa
ccctgtagaatattctgtacacagccaagaaggatagctgctctcagcattgctgaaagg
gtggctttggaaaggggagagaaaatagggcaaacagttggttatcaaatacgactggag
agcaaagtgtctccaaaaacgttgctgacattttgcacaaatggtgttcttctccgcact
ttgatgaacggggacgcgtcgtttggtggtgttacacatgtcattattgatgaagttcat
gaaagagaccggtttagtgatttcttactggcttccatggatgaactgatgacaaaacat
cctcaccttaaaattatcttgatgagtgcagcattaaatacacaactgtttgtccagttt
ttcaataactgtccagttgtacacattcctggcacacttttcactgtgaaggagtacttc
ctggaagatgtattgaagtggacaaaatacagcaacaaagcaatggaaaaagcaaaaaga
gagaagggaacagtgacaaaacagcaagaacagttggaggaattgtgtgctaagatgagc
attggcataacgtatacagagatggaagaccattctatggctggtaaacaaagccattcc
gacacagattcagctccaaataacacaaatgaagataaaagtgaactccctgactggata
ataaaggaaatggatcagtttcttactgacattttcttgatgggaagtgaagagacattt
gcccagttggtccatctcattatgagtgagaatgtcagtgtggactaccagcattcagaa
acaggtgttacacctttaatggtgaccactgctaggggcatgaatgacgaagtggaacag
ctacttaacctgggcgccaacgttaatctccacttacccaacggctggaccgccattgac
tgggccaagcggtttgaaagaaatgacattttagaaatgctggaagctttaatgctgtca
aatgatgtggggccttctggagattctttggcagaagctggtaaccagttgttgaccgat
gcagaaaaagatatgctatcgctataccaaagctgttttgatgatgaaaaagtggatatc
cagctcatcctcaatctcatttaccagctcatgtcaaactacagtgatggtgctattctg
gtcttcctgcctgggtatgatgacattgttggcctcagagatctgatcgcagaggactct
ttttttcacaagtacaaatacttattatatacacttcattctgccatgcagtccaacgat
cagagaagagtatttaaaacaccacctccaggagttcgaaaaattatactggccaccaac
attgctgagacaagtatcaccattgacgatgtagtgtttgttatcgacgcaggcaaagtc
aaagagaaaacctttgatgctttgttgtctgtcaccatgttgaagagtaactggatatca
aaggccagtgcactacagagaaagggcagagcaggaagagttagacctggtctctgttat
cacctgttcagtaaagtgcggtattcaaacctcatggactttcctgccccagagatactg
agataccctctccaggagttgtgtctccacaccaagctgctggcccctaagacctgctcc
attgctgactacttgtccaagtgtccagagcctcccactttccttctcaccaggaatgct
atacatctcctcaagcaaatagatgccctggatacgtgtgaggatctgacagagctggga
catcacttggcagacctgcctgttgagccgtgcctggggaagatggtgctgtactctgtt
gtcctcaagtgtctcgacccagtactcaccattgtttgtacattggcctacaaggatcca
tttgtattgcccagtcaacctaacatgaagagggaagcaagtatgtctaggcgtaagttt
gctgctgacacctgcagtgatcacatggctctactacgagctttccaggcatggcagcga
gcaaggactgacggttgggagagaagcttctgtgataagaactacctgtcgtcagcctgt
atggagatgatagtgggcatgagaacccagctgcttggccagttgagggcgtccggtttt
gtacgagctcgaggtggaggagacatcagggacctgaacactaactctgagaactgggct
gtggtgaaggccgccttgtgtgctggtagctaccccaatctgctccgtgttgacaggcaa
aaagccagactagccacccagaaagaaagtaatgtgttcttccacatgagttctgtggta
agtcaaattccgagctcaaagaagacacagaaaagccagttcatcaaaagtctgcgttct
gattggctattctaccaggagatgacgcggttccagcgacaccctatggttaggacctgt
accatggtgtcgcctatcacagtcgctgtgtttgctggaccagctaaactatcaccagac
gctgtcaaggacagacagttgaacagaaattttggaatgagaggagagtttggaagtgag
gaaagtgacagtgaaggtgaggataaagaagataacaggaagaccacactacagctggac
gaatggctcggctttaaactggacaatgagacgacgagcatagtgttacagctgagacag
aagtggaacagtctgctgttacggaggatgaggtctccctccaagacttggtcacaactg
gatgagtctgtggtgagaacaattgtcaatatactgaccaatgaggagcagacaatggga
ctgcaacaacccgctggaattggtcagcgaccaagacctatgaccgcggagtccatcatg
tctggaggaggtggaaagggcaattttgactttgttacacctccaaggaagaattttcaa
tttcaacagaaatccagcagtggtgttgataccgcttcgtccagcagtagtaactcacca
tcggctaacacgagccacagaggtagtcagtccagtaccccctccatgagtccaggcccc
gcctcgcccagtgtgggcgtgaaccacagcagcagccaacctaccagcttctttgttatg
aaatgcaacaatcaaagcaaagtggacttgtccatgaacaaaggagtgtgggccactaac
aaatcaaacaataagaaacttaacagtgtctttcaggaggggaacacagtttatctggtt
ttctcagtgcaaggaagcggccatttccagggctatgctaagatgaagtcagagtttgta
gacaagaaggttcaggactccagttatcatggactcgactactgctgtgatgtagagtgg
atcaaaagagcaaacttgtcattccaaagtactctgcagttgctgaacccatgggatgac
aatagaaaagtacagaccagtagggatggccaggagattgagccacatgttggagaaacc
ttgatcaaattgtgggacaaatacttggcccatcaggggaagtcatccccctcggccagt
aataagccacagaatgcaggtaagagaggggcctttcacggcccagcgtcacctgaagga
cctggcagctaccagtctatagggggcgatcacagtgactactcctcccacggtactcgt
aacttctacaacagacagtcacaaggaggataccaggaccaaggaaactatggagggtac
caggtcaacgaagggtcacataatggtcacagaggccaaggtcaaagggggaaatcttca
gggaggtcaccgatcaatcagggaaatccctttgataactatagtgggtaccacactggt
ggataccaagataacggggtagcacccggaactgagtacggatcatacagctaccaccag
agaggtcaagggtcaggaggtcacaggagaggaaatcacaatcgatctgggaataggaga
tag
DBGET
integrated database retrieval system
