Mizuhopecten yessoensis (Yesso scallop): 110448128
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Entry
110448128 CDS
T05079
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
myi
Mizuhopecten yessoensis (Yesso scallop)
Pathway
myi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
myi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110448128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
myi03019
]
110448128
Enzymes [BR:
myi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
110448128
Messenger RNA biogenesis [BR:
myi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110448128
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
Motif
Other DBs
NCBI-GeneID:
110448128
NCBI-ProteinID:
XP_021349868
LinkDB
All DBs
Position
Unknown
AA seq
540 aa
AA seq
DB search
MVEVLKSTFEDYLPLIERSIKSADFIAIDTEFTGLVKSAKERTNLFDTSEERYQKLKKSM
SQFTISQLGISTFKRQDKNSYSATTFNFYLYPSSFGPVDVRFLVQASSLQFLCKYDFDFN
KFVYEGIPYLNKPQQKAMKNHLHSKALFQAKDRSNDIDERVLQALCFQVAEWLVKTEDDQ
QAILEVTDEEVPELRFVKSFIVRTELRQRFKNVWINVIEGEQRIIQISKRDEKDINSDTT
KEDMDKLYESLKGFSRVFKMLKGGVPIIGHNMFLDLLLIYDKFHKPLPDTFEAFKTEIQA
ILPVIFDTKHICNSARNEHFRDSGLLENSSLQMLYQSLSSLAGQQFVIDTPSVVHTSDRY
KDESRPHEAGFDAYMSGFVFLRLSHMLTFLNVNSTDVRPCPFRRYRTEMAPYKNKINIIR
GNVNHVCLDGPDPPSFRPELLYVQSKHQSHDLHLMQLLKWFSRHGTVDVQITDSQRALVA
ASNYRCSKEILKAFQNHKMITVTKYNKWKHSPVIRRYLWAGAILSGGACVLALLSSRKKD
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggttgaagtactcaagtcaacatttgaagattatcttccactgattgaacgcagtata
aaaagtgccgacttcattgctattgacacagagtttactggactggttaaaagtgccaag
gaaaggacgaatctgtttgataccagtgaagagagataccagaaactgaaaaagtctatg
tcccagttcaccatatcacaactaggaatttcaacattcaaaaggcaagacaaaaacagc
tactctgccacaaccttcaatttttacctttacccatcatcctttgggcctgtggatgtc
cgctttcttgttcaggcttctagtcttcaattcctgtgcaagtatgattttgacttcaat
aagtttgtatacgagggtataccttacctgaacaaaccccagcagaaagcaatgaagaat
catcttcactccaaagctttgtttcaggcgaaggaccgatccaatgatattgatgagcgt
gtgctccaagctctttgttttcaggtggctgagtggctggtgaaaacagaggatgaccaa
caggcaatactggaggtcactgatgaggaagtcccagaacttaggtttgtgaaatctttc
attgtgcggactgagctcaggcaaagatttaagaatgtatggataaatgtaatagaaggc
gaacagaggataatacaaatttctaaacgtgatgagaaggatataaacagtgacacgact
aaagaagatatggataaattgtatgaaagtctgaaagggttttcaagagtttttaagatg
ttgaaaggaggtgttccaatcattggacacaacatgtttctggacctacttctgatttat
gacaaattccacaagccattaccagatacctttgaagcattcaagacagaaatacaggca
attttaccagtaatttttgatactaagcacatctgtaacagcgctaggaatgagcatttc
agagattcaggacttctagaaaactcatctctgcagatgttataccagagtctttcaagc
ctcgcaggccagcagtttgtcatcgacacaccatcagtagtccacacgtctgatagatac
aaagatgagagtcgtccccatgaagctggcttcgatgcttatatgtctggctttgttttt
ctaagattatcgcacatgctgacgttcctaaatgtaaattcaacagatgtacgaccttgt
ccattcaggcggtatagaactgagatggctccctataagaacaagattaacatcatccgg
ggaaacgttaaccatgtgtgtttggatggcccagatcctccgtctttccgccctgaactg
ctgtatgtgcaatcgaaacatcaatcacacgacctccatttgatgcagttgctgaagtgg
ttttcacggcacggaacagtagatgttcaaataacagattcacaaagagctttggtagct
gcttcaaattacagatgttctaaagaaatactgaaagcctttcaaaaccacaaaatgatc
acagtgaccaagtacaacaaatggaaacactcccccgtaatcaggagatatctctgggcc
ggagccatcctgtcaggtggagcttgtgtactggctttattatccagtcgtaagaaggat
tga
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