KEGG T05079: 110453921

Mizuhopecten yessoensis (Yesso scallop): 110453921

Entry

110453921         CDS       T05079

Name

(RefSeq) cleavage and polyadenylation specificity factor subunit 4-like

K14404

cleavage and polyadenylation specificity factor subunit 4

Organism

myi Mizuhopecten yessoensis (Yesso scallop)

Pathway

myi03015

mRNA surveillance pathway

Brite

KEGG Orthology (KO) [BR:myi00001]
09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    110453921
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:myi03021]
    110453921
   03019 Messenger RNA biogenesis [BR:myi03019]
    110453921
Transcription machinery [BR:myi03021]
Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     110453921
Messenger RNA biogenesis [BR:myi03019]
Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     110453921

SSDB

Motif

Pfam:

zf-CCCH zf_CCCH_4 Torus zf-CCCH_2 zf-CCCH_3 zf-CCHC zf-CCHC_2 zf-CCCH_4 zf-CCHC_3 zf-C3H1 zf-CCHC_4

Other DBs

NCBI-GeneID:

110453921

NCBI-ProteinID:

XP_021358839

LinkDB

Position

Unknown

AA seq 278 aa
MQEIVASVTHMRFDIEMALEQQLGSQPLPFPGMDKSGSAICTFYLSNICSKGTACPYRHI
KGDRTVVCKHWLRGLCKKGDDCEFLHEYDLSKMPECYFFSKFGECNNKECPFLHIDPSAK
IKDCPWYDRGFCRHGPKCKNRHVRRVLCQCYLQGFCLDGPKCKFMHPNFDLPTYDPTTQA
KKATIVCHMCGETGHKAISCPKGKSGDGKPSMLHSSPIGRPINVQTQQSDSHGHTERGEG
GDPRRPLDQVTCFKCGEKGHYANKCPKGHLAFLSINAQ

NT seq 837 nt +upstreamnt +downstreamnt
atgcaggaaattgtagcttcagttactcacatgaggtttgacattgaaatggctttggaa
cagcaacttgggtcacagcctctgccgttccctgggatggataagtctggttcagccatt
tgtacattttacctgagcaacatctgcagcaagggcacagcatgtccataccggcacatc
aaaggtgacagaactgtggtgtgtaaacattggctcagaggactctgcaagaagggagat
gactgcgagtttctgcacgaatatgatttatcaaaaatgcctgaatgctactttttctcc
aaatttggtgaatgcaataacaaggaatgcccgtttctacatatagatccctcagctaaa
atcaaagattgtccatggtatgatcgtggattctgtagacatggtccaaagtgcaaaaac
agacatgtccgccgagtattgtgtcagtgttacctacaaggcttctgtttagatggacca
aagtgtaaatttatgcatccaaacttcgacctgcctacatatgatccaacaacacaagcc
aaaaaggccaccattgtatgtcacatgtgtggtgagactggccacaaggccatcagctgt
cccaaaggcaagagtggcgatggaaagccatctatgcttcactcatccccgatcggcaga
cccatcaatgtacagacacagcaatcagattcccatggtcacacagagcgaggggaaggc
ggtgaccccagacgaccccttgatcaagtcacttgtttcaaatgtggagaaaaaggccat
tatgctaacaaatgtccaaaaggtcaccttgcttttctcagtataaatgcccaatga

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