Mizuhopecten yessoensis (Yesso scallop): 110454464
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Entry
110454464 CDS
T05079
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
myi
Mizuhopecten yessoensis (Yesso scallop)
Pathway
myi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
myi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110454464
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
myi03041
]
110454464
03009 Ribosome biogenesis [BR:
myi03009
]
110454464
Enzymes [BR:
myi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110454464
Spliceosome [BR:
myi03041
]
Complex A
U2 snRNP components
U2 related factors
110454464
Complex B
110454464
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
110454464
Ribosome biogenesis [BR:
myi03009
]
Eukaryotic type
90S particles
Helicases
110454464
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
WHD_HA2
Helicase_C
DEAD
nSTAND3
AAA_22
AAA_19
Cas3-like_C_2
SRP54
Flavi_DEAD
nSTAND_NTPase5
ABC_tran
AAA_7
TsaE
T2SSE
AAA_25
NACHT
Motif
Other DBs
NCBI-GeneID:
110454464
NCBI-ProteinID:
XP_021359643
LinkDB
All DBs
Position
Unknown
AA seq
723 aa
AA seq
DB search
MSKRHRIDVGDSSKRTRNEDGVKDEKPKSIFEQFNIPKPQIQMNPFTGLPYSPRYFELFN
KRSKLPVWEYKEKFMDVLHKNQTLVLVGETGSGKTTQIPQWCLEWVRARFAKKGVACTQP
RRVAAMSVAQRVSEEMDVGLGQEVGYSIRFEDCTSSKTLLKYMTDGMLLREGMSDPLLEN
YGIIMLDEAHERTLATDILMGLLKEVAKQRSDLKIIIMSATLDAGKFQNYFDNAPLMSVP
GRTHPVEIFYTPEPERDYLEASIRTVVQIHMCEEKEGDILLFLTGQEEIDEACKRIQREV
DNLGPEIGDMKCIPLYSTLPPNLQQRIFEPAPAKKANGGIGRKVVVSTNIAETSLTIDGV
VFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTQPGKCFRLYTERAYKQE
MQENTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDG
ELTELGSMMAEFPLDPQLAKMVIASCDFTCSNEILSITAMLSVPQCFVRPTEAKKAADES
KMRFAHIDGDHLTLLNVYHAFKQSQEDPQWCYDNFVNFRSLKSADNVRQQLARIMDRFNL
RRSSTDFTSRDYYLNIRKALVSGFFMQVAHLERTGHYLTVKDSQIVQLHPSTCLDHKPEW
VLYNEFVLTTKNYIRTVSDVKPDWLIAVAPQYYDMENFPHCEARRQLERIIAKMQTKQYQ
EGF
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagagacaccggatagatgttggagactcctctaaaaggacacgaaatgaagat
ggagtcaaagatgaaaaacccaaatcaatattcgaacagttcaatatacccaagccacag
atacaaatgaacccattcacagggctaccctactctccaagatactttgagttatttaac
aaaaggagcaagttaccagtatgggaatacaaagagaagtttatggatgtactacacaaa
aaccagaccttggtattggtgggagagaccggctccggcaaaacgacacagattccccaa
tggtgcctagagtgggtgagagcacggtttgccaagaaaggagtggcttgtacccagcca
agacgagtggcagccatgtcagtggctcagcgtgtgtccgaggagatggacgtcggcctt
ggacaggaggtcggatacagtatcagattcgaggattgtacttcatcaaaaacactgctc
aaatatatgacagacggtatgttgttgagagaaggaatgtctgacccactgttggaaaat
tacggcatcatcatgctggacgaggctcacgaacgtacgctggctacagatatcctcatg
ggtctgctgaaagaggtcgccaagcagaggtcagatctaaaaatcatcatcatgagtgcc
acattggatgcaggaaagtttcagaattactttgacaatgctcccttgatgagtgtgcct
ggacgaacccaccctgtagaaatcttctacacaccggagcctgagcgagactacttggag
gcgtctatacggaccgtggtccagatacacatgtgtgaggagaaggagggagacatccta
ctgtttctcaccggacaggaggagatagatgaagcatgtaaacgaatacaaagagaagtt
gataatttgggaccagaaataggcgacatgaaatgtataccgctctattccacacttcca
ccaaacctacaacagaggatatttgaacccgcgcctgctaagaaggccaatggagggata
ggaaggaaggtggttgtgtcgactaatatagcagagacctccttaacaattgacggggtc
gtgtttgtgatagatccaggcttcgctaaacaaaaggtgtacaacccgcgtatacgagtg
gagtcattgttagtaacagcgataagtaaagcaagtgcccaacagagggcaggacgagct
ggacgaacgcagccgggaaaatgtttccgtctgtatacagaacgagcgtacaaacaggaa
atgcaggaaaacacatacccagaaatcttacggtcaaatctgggatccgtagtgctacaa
ctgaagaaacttggtatcgacgatctggtccactttgattttatggaccctccagctcct
gagacactgatgagagctcttgaattgttgaattacctggcagccctagatgacgatgga
gaactgacagagctagggtccatgatggccgagttccctctcgacccacaactggccaag
atggtgatagccagttgtgactttacctgttccaatgagattttgtcaataactgccatg
ctgtcagtcccacagtgttttgtgcgacctaccgaggcaaagaaggcagccgatgagtcc
aagatgaggtttgctcacatcgacggggaccacctcactctcctcaatgtataccacgca
ttcaaacaaagccaggaagatccccagtggtgctacgacaactttgtaaacttccgatca
ctgaagagtgctgacaacgtacggcagcagttggccaggataatggatcgattcaatcta
cggcgatccagcaccgacttcaccagccgtgactactatctgaacatcaggaaggctctt
gtatcaggatttttcatgcaggttgcccatttagagaggactgggcactacctgacggtg
aaggacagtcagattgtccagcttcatccttccacctgccttgaccataaaccagaatgg
gttctttacaatgagtttgtactgaccacaaagaattacattcgcacagtgtctgatgtc
aaacctgattggttgatagcagtagctcctcagtattacgacatggaaaacttcccacat
tgtgaggctcgccgacaactagagaggatcatagctaagatgcagaccaagcagtaccaa
gagggattctaa
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