Mizuhopecten yessoensis (Yesso scallop): 110456127
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Entry
110456127 CDS
T05079
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
myi
Mizuhopecten yessoensis (Yesso scallop)
Pathway
myi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
myi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110456127
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
myi03019
]
110456127
03041 Spliceosome [BR:
myi03041
]
110456127
Messenger RNA biogenesis [BR:
myi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
110456127
Spliceosome [BR:
myi03041
]
Complex B
Other components
Prp19-related factors
110456127
Complex C
110456127
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
PPR
ARM_TT21
BDHCT_assoc
DHR-2_Lobe_A
Motif
Other DBs
NCBI-GeneID:
110456127
NCBI-ProteinID:
XP_021362363
LinkDB
All DBs
Position
Unknown
AA seq
850 aa
AA seq
DB search
MIMPEKKDSQKDIFFEDEDLPYEEDILRNPFSVKCWLRYIEHKKAAPKNAINLVYERALK
ELPGSYKLWYNYLKIRRRQCKGHCITEPLYEDANNAHERALVFMNKMPRIWLDYCQFLVD
QSKVTKTRRTFDRALRALPITQHHRVWPAYLKFVCKYNLQETTVRVYRRHLKLQKEKTED
YIEYLKNMEWLDEAAIRLVTVINDDTFVSKEGKSKHQLWNELCELVAKNPDKVTSLKIEP
IIRQGLKRYTDQIGVLWNSMADYYIRGGHFERARDIYEEAIQTVITVRDFTQVFDAYAQF
EKNVIGAEMETMEEKGASEEDDLALELRLARLESLMDRRPILLNSVLLRQNPHNVHEWHK
RVKLYEGKPREIINTYTEAVQTVDPKQASGKPGTLWVEFAKFYEAAGQIEDARVIFDKAV
KVPYKHVDDLATIICEWGEMEIRHENYEEALRLMQKTTVPPSRKVAYHDESETVQDRVHK
SLKVWSMYADLEESFGTFKTCKAVYDRIIDLRIATPQITMNYGLFLEENNYFEEAFKAYE
KGIALFKWPNVYDIWNTYLSKFIERYGGSKLERARDLFEQCLENCPPKFAKAIFLLYAKL
EEEHGLARHAMAVYDRATKGVLPEEQAEMFNVYIKRAAEIYGVTYTRPIYEKAIEVLPDE
QSREMCMRFADLERKLGEIDRARALYSHCTQMCDPRVAPHFWQVWKDFEIKHGNEDTVRE
MLRIKRSIQAMYNTQVNFMSSQIMAAQGGGKADTPETSNPEIDSMKKLEERARQLAEEAM
KDQAKPEKGILFVRSNTTDEELGEMTKTTNPDAIDIDDFSSDDDENIEELEVQKQSVPSE
VFGSLANEED
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgataatgccagagaaaaaagattcacagaaggacattttcttcgaggatgaagacctc
ccttacgaagaagacatcttgagaaatccgttttcagtgaaatgctggttacgttatatt
gaacacaagaaagctgctcccaaaaatgccattaacttggtatatgagagagcactgaaa
gaacttccaggaagctataagctgtggtacaactacctgaagatccggagacgtcaatgt
aagggccactgtatcactgagccattgtacgaggatgccaacaacgcacacgaacgtgcc
ctggtgttcatgaacaagatgccaaggatttggcttgattattgccagttcttggtcgac
cagtctaaagtgacgaagactcggcgtacatttgaccgagctttgagagccctccccatc
acacagcaccacagagtgtggcctgcctacctcaagtttgtgtgtaaatacaacctacag
gagaccactgttcgtgtgtacaggcgtcacctaaagctgcagaaagagaagacagaggac
tacatagaatacctgaaaaatatggaatggttagatgaggcagctatacgtttagtgacc
gtaattaatgatgacacgtttgtgtccaaagaagggaaatctaagcatcagttatggaat
gagctgtgtgagttggtcgccaagaacccagacaaggtgacgtccctgaagattgagccg
atcatacgccagggtctgaagcgctacacagaccagataggagtgctctggaactccatg
gctgattactacatcagaggcggacactttgagagggctagagatatctatgaggaggcc
attcagacagtcattacagtccgcgacttcacacaagtgtttgatgcttatgctcagttt
gaaaaaaatgtcattggtgcagaaatggagaccatggaagaaaagggagcctcagaggaa
gatgaccttgctcttgagttacgtttagctcgtttagaaagccttatggacaggcgtcct
atccttctaaacagtgttctacttcggcaaaacccacacaatgtacatgaatggcataaa
agggtgaaactctatgagggcaagccaagagagataatcaacacttatacagaggcagta
cagacagtggacccgaagcaggcatctggaaagccaggtacactgtgggtggagtttgcc
aagttctacgaagcagctgggcagattgaggatgctcgtgtgatatttgacaaggctgtc
aaggtgccttacaaacatgtggatgacctagcaacaatcatctgtgaatggggggagatg
gaaatcagacacgaaaactatgaagaggccctgagattgatgcagaaaaccacagttcct
ccatctcggaaagtggcctatcacgatgagtcagagacggtacaggaccgagtacacaag
tctcttaaagtctggtccatgtacgctgacctggaggaaagctttggcacgtttaagacc
tgtaaagctgtgtatgatagaatcatcgacctacgcatagccacaccacaaattaccatg
aactatggcctgtttcttgaggaaaacaactactttgaggaagctttcaaggcatacgag
aagggaattgcattgttcaaatggcccaatgtctacgacatctggaatacctatttatcc
aagtttattgagagatatggaggatcaaaacttgagagagctagggacttgtttgaacaa
tgcctggagaactgtccgccaaaatttgcaaaagcaatattccttctgtatgccaagttg
gaagaggagcatggtttagcacgacatgccatggctgtgtacgatcgtgctactaaaggg
gtgttaccagaggaacaggcagagatgtttaacgtctacattaagagagcagctgagata
tatggtgttacctatacccgacctatctatgaaaaagccatagaggttctgccagatgaa
caatcaagagagatgtgcatgaggtttgcagatcttgaaagaaaacttggagaaattgac
agagcaagggcactatattctcattgtacccagatgtgtgatcctcgggtggcaccccac
ttctggcaagtgtggaaggactttgagattaaacacgggaacgaggacacagtgcgggaa
atgttgaggatcaaacgtagcatacaggctatgtacaacacacaggttaacttcatgtct
tcacaaataatggcagctcaaggtggaggcaaagcagacacaccagaaacttccaacccg
gagattgacagcatgaagaagttggaggagcgtgccaggcagctagcagaggaggccatg
aaagaccaggccaaacctgagaagggcatcctgtttgtcaggagtaacaccacagatgag
gagctaggagagatgacgaagacgaccaaccctgatgctattgacattgacgacttcagt
agtgatgatgacgaaaatattgaagaattagaagttcagaaacagtctgttccatcagag
gtattcggatcactggctaatgaagaggactga
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