Mizuhopecten yessoensis (Yesso scallop): 110458103
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Entry
110458103 CDS
T05079
Name
(RefSeq) DNA mismatch repair protein Msh6-like isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
myi
Mizuhopecten yessoensis (Yesso scallop)
Pathway
myi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
myi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
110458103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
myi03400
]
110458103
DNA repair and recombination proteins [BR:
myi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
110458103
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
Rad17
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
110458103
NCBI-ProteinID:
XP_021365348
LinkDB
All DBs
Position
Unknown
AA seq
1370 aa
AA seq
DB search
MGPKQTPAKKSNTLFSYFNKSPVVKQSSTPKTDDKDILSPKRSPNQKSSSPGSATPTSKQ
TGFAVGDLTWTKLEGYPWWPSMVCTHPTDNIHFKGGKNPQVHVQFFDDPVSRAWIKAKNV
HHYKGSNDKEYQMGGQFFSHNPKVKQGTCEADKAIKLSLEERLKLVVELQPSDEEEEEES
MDLDPDIFDDEMDEETDNSKENVSTTEDKEKKKKPSKSPRKTPKKDSNKRRSTRTPKPKR
RRIIENHDSEEESGDEFKLKVDSDEPSSNSSSEDEDSSGVDEDDVSDIETGSEPESPIKA
PQKRKRPPPKSTNKTVAKQSDSPDTTTPSLNSFSSGSKPTSSFTPTVGDKTKSRLATFTA
ADSPSTSKASSSEQEDNFPHLKLDFLQPHKIKDAKMRNRTDPEYDPKTLYVPDSFKKTTT
PGMRQWWELKAKYFDTILFFKMGKFYELFHMDAVAGVNELGIIFMKGEQAHSGFPEIAYN
RYAETLIQKGYKVVRIEQTETPDMMSERLKTSSKQPTKFDKVVRREVCRVTSKGTQTFSF
MDGDCSGAQNSFLLAIAEKEENTEGCSTYGVCFVDTSIGKFFLGQFSDDRHCSRLRTLIA
HYTPIQVLFEKNKMTAKTQLVLRNNLTSVSKEGLASGSEFWDSSKTLKRLAEEDYFKDND
EFVWPATIKKMISETDALGLTAADEYSLAVRALGAVTWYLQYSLLDQELLSMNNFEEYCP
LDDIEVTECKKETFAGRQHMVLDGVTLANLDITENSANGTLEGTLLEQLDHCNTPFGRRL
FRQWLCAPLCNPVSINDRLDAVEDLIGCPDLVATTTEILKKLPDLERSLNRIHSLGSASK
SKNHPDSRAIIYDEAKYSKKKIEDFLLTIDGFRAMSKVAKKFQGHVKDFKSKLLTKTMTI
QNEEESDGHFPDLHDDIEFFEHSFDHNKAKKDGVIVPNKGVDVDYDGASADIQATERSLN
LYLDRQRTRLGCKAMTFWGTGKNRYQMEVPESALKRVPDDYELFSSKKGWKRYRTSEIDE
YLSELADAEERKDAALKDTMRRIFHSFDERYKTWEVALQCISVLDVLMSLSSYSRCGDGV
MCRPEVVSPADDTEPFLEIRDGRHPCIAKTFSGGDFIPNDTLIGVGDENSMETDEQENAN
SKIILVTGPNMGGKSTLMRQVGLITVIAQMGCYVPAEKCRMTPVDRVFTRLGASDRIMAG
ESTFFVELSETSAILQHATQHSLVLMDELGRGTATYDGTAIACSVVEELSRRVCCRTLFS
THYHSLVEEFSHDPNIRLGHMACMVENEDETDPTQETITFLYKLSHGACPKSYGFNAAKL
ANIPAEIIRVAVKKSREFEESTAKLRLVRALHKDCSVDKLSNLQQQIRDA
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atgggtccgaaacaaacacctgccaagaaatcaaatactttattttcttattttaacaaa
agtccggttgtaaagcaatcttccacgcccaaaactgacgacaaggacatcttgtcaccc
aagcgatcacccaaccagaagagctcgagcccagggtctgctaccccgacaagtaaacaa
acaggctttgctgtcggtgatctgacatggaccaaactggagggttacccttggtggccg
tccatggtgtgtacccaccctactgataacatccacttcaagggaggcaagaatccccag
gtccatgtccagttctttgacgacccagtctcccgcgcttggatcaaggctaagaatgtc
catcactataaggggtcaaatgacaaggaatatcagatgggtggtcagttcttctcccat
aacccaaaggtcaagcagggaacatgtgaagcagacaaagcaattaaacttagcctagag
gagcgacttaaactggtcgtggagttgcagccgtccgatgaggaggaggaagaggagagc
atggatttggatcctgacatatttgatgatgaaatggatgaggagacggacaacagtaag
gaaaatgtcagcacaaccgaggacaaggagaagaagaagaaaccttccaagtctcccaga
aagacacccaagaaagattctaacaagcggcgttctacacggacaccaaagcccaaacgt
cgtcggatcatagagaatcatgacagcgaggaagagtctggtgacgaattcaaactcaag
gtagactctgacgagccaagcagcaacagcagcagtgaggatgaggatagcagtggtgtg
gatgaggatgatgtctctgatatagaaacaggctccgaacccgagtctcccatcaaagct
ccccagaagagaaagcgacctccaccaaaatctacgaacaaaaccgtggctaagcagagt
gacagtcccgacaccaccaccccgtccctcaatagcttctccagtggcagcaaaccaaca
tccagcttcacaccgactgttggcgacaagaccaagtcgaggctggctacatttacagct
gctgatagtccaagtacatcaaaagcttcatcttcagaacaggaagacaacttcccgcat
cttaaactggacttccttcaacctcacaaaatcaaagatgcaaagatgcgtaacagaact
gacccggaatacgaccccaaaacactctatgttcctgacagtttcaagaaaactacaaca
cctggcatgaggcaatggtgggaactgaaggccaagtactttgatacaatcctcttcttc
aagatgggaaaattttatgagctgtttcacatggatgctgttgcaggggtgaatgaactt
gggattatattcatgaagggagaacaggcccactctgggtttccagagattgcctataac
aggtatgcggagacactcatacagaagggttacaaggtcgtccgtattgagcagaccgag
acaccagacatgatgagtgaacgcctgaaaacttcatcaaagcagccaaccaagtttgac
aaagttgtgaggcgtgaagtttgtcgtgtaacatccaagggaacgcagacatttagcttc
atggatggtgactgtagcggggctcagaacagtttcctcctcgccattgcagagaaggag
gagaacacggaaggttgcagtacgtatggggtctgttttgtagacacctcaattggaaag
ttctttcttggccagttttctgatgacaggcactgctccagactgaggactttgatagct
cactacacacctatacaggttttatttgaaaagaacaagatgacggcaaagacacaatta
gtgcttagaaacaacctgacatctgtgtcaaaagaaggcttggcgtccggatcagagttc
tgggatagctccaaaacactcaaacgcctagctgaagaggattactttaaagacaacgat
gagtttgtgtggccagctacgatcaagaaaatgatctctgagacggatgctctagggttg
actgctgcagatgagtacagtctggctgtacgggccctgggggcagtcacatggtaccta
cagtacagcctgctagaccaggaactcctctccatgaacaatttcgaagagtactgtccc
ttggatgatattgaagttacagaatgtaaaaaggagacatttgctggtcgtcagcacatg
gtattagacggagtgaccctagctaacctggacatcacagagaactcggccaatggtaca
ctggagggcactctgctggaacagcttgatcattgtaacacaccatttggccgccgcctg
ttccgacagtggctgtgtgctccactttgtaacccggtctccattaacgatcgtctggat
gctgttgaggatctcattggctgtccagacctagttgctacaacaacagaaatattaaaa
aaattaccagaccttgagcgatcgttaaacagaatccacagtctaggatcagcgtccaag
agtaaaaaccatcccgactctcgtgctattatatatgatgaagccaagtacagtaaaaag
aagattgaggacttcttgttaacaatagacgggttcagggccatgtccaaagtagccaag
aaattccaaggtcatgtcaaggacttcaagtcaaaattattaacaaagacgatgacaata
cagaatgaggaggaaagtgacggacattttcctgatctccatgacgacatagagttcttc
gagcattcatttgaccacaataaggcaaagaaggatggagtgatagtacccaataaaggt
gttgatgtagactatgatggggccagcgctgacattcaggccacggagaggtcacttaac
ctttacctcgaccgacagaggacacgacttggttgtaaggctatgactttctggggtacg
ggaaagaatcgctaccagatggaggttcctgagagtgccctgaagcgtgtgcctgatgat
tacgagctcttctcatcaaagaagggatggaaacggtacaggacatcagaaatcgacgaa
tatttgtcagaacttgcagatgcggaagagagaaaagatgcagcattaaaggacacaatg
cgacgaatcttccacagttttgatgagaggtacaagacctgggaggtggctctacagtgt
atttctgtgctagacgttctgatgtcacttagttcctatagtcggtgtggtgacggagtt
atgtgtcgaccagaggttgtctcccctgctgatgacactgagccattccttgagatcaga
gatggacggcatccatgcatagcaaagacattttctgggggagacttcataccaaacgac
actcttattggagtgggcgatgagaattcaatggagacagatgaacaagagaatgctaac
agtaagattattctggtgacaggaccaaatatgggtggtaaatccacgttgatgcggcaa
gtgggtctcatcactgtaatagctcaaatgggttgctatgtgcccgctgagaaatgtcgt
atgacaccagtggaccgtgtcttcaccagacttggtgcctcagacagaattatggctggt
gaaagtacgtttttcgtggagttgagcgagacgtcggccattttacagcatgctacacag
cattccttagtgctaatggacgagttaggacgaggaacagcgacgtatgatgggacggcc
attgcctgttcagtcgtggaggagctttccaggcgcgtctgctgtcgtacacttttctcg
acgcattaccattcattggtggaggagttttcacatgaccccaatatcagacttggtcac
atggcctgtatggtggagaatgaggacgagacagaccccacacaggagacaatcaccttc
ctctacaaattatctcatggagcctgccccaagagttatggattcaacgctgcaaaattg
gccaatattcctgccgagataatccgcgtggcagtgaagaagtccagggagtttgaggag
agcacggcaaaactccggcttgtcagagcattacacaaggactgttcagtggacaagttg
tcgaatctccagcagcagatcagggatgcgtga
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