KEGG   Mizuhopecten yessoensis (Yesso scallop): 110458364
Entry
110458364         CDS       T05079                                 
Name
(RefSeq) helicase-like transcription factor isoform X1
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
myi  Mizuhopecten yessoensis (Yesso scallop)
Brite
KEGG Orthology (KO) [BR:myi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:myi04121]
    110458364
   03400 DNA repair and recombination proteins [BR:myi03400]
    110458364
Enzymes [BR:myi01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     110458364
Ubiquitin system [BR:myi04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    110458364
DNA repair and recombination proteins [BR:myi03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    110458364
SSDB
Motif
Pfam: SNF2-rel_dom HIRAN Helicase_C zf-C3HC4_2 zf-C3HC4 zf-C3HC4_3 zf-RING_2 zf-RING_UBOX zf-RING_5 zf-C3HC4_4 RING_XB3-XBAT31 Prok-RING_4 DEAD zf-Nse zf-RING_10 zf-RING_6 TRAF3_RING zf-rbx1 zf-RING_4
Other DBs
NCBI-GeneID: 110458364
NCBI-ProteinID: XP_021365702
LinkDB
Position
Unknown
AA seq 1509 aa
MARTKQTHRQDGDGKALPRAVFGNRSNGSNSLGRKKTKAKKKWRKRSFSNTWNRFNNYED
RSNYKWPYAGAANLGPIVIGDDMGHDDLDDEVLLGHLRGNIVGIQYYRGTVNNNEMVAIE
REPHNKYDCNAIRILNVGGQQVGHIKRELAKPLTHIMDNGWARLEGIVPFGSSNMYTMPI
NMTLWGKPEFRQQTADKLSGQGFNPTEPSSNLDQAGGSGMGMATPRRTYLTPEEMKNELD
ELFENLDEGDKTSTANPAKAIVTPMYTHQKQALNWMIQRENGSKLPPFWEEKKGRYFNSV
TVFTTDKRPQSVRGGILADDMGLGKTLEMIALIMTNFKDGLPLAVPVPGRVRQSKQKRTQ
RLDCYKLEPKPMAMRKVNLKREKMSDFIVDDSKPSTSYARKFVRNISAPGNLQRSRLPYL
PDDDISDSDSSVDSVEDYDDSQQSSMVKKEDPDFVPKGCPSKENMAMMSSRPKRQSKRKV
RYTVNGDSDVALQDSPSRSTPKEVAKHHVAAASSGKLTFSSGQDSATLSSPSTEYITPTG
DLDNRFINSAKPDNVLSSVTGHKSAEDTVVTPRAMTETQDSKVRDVTKTAKAEQIDGLKK
EIQMPSIGATQSCVSVGESILQPKEGSVVIDSDTVKDSTVHTCTAVSTGVAVLEGPDLEV
TEHGDTGDQCITSESTVNSIDMGTEKPVSGQEKTTEPEISKNKKPAKSKARLAPVMLAPT
TSGRPRRNAKKPARYAASSDSEVENSPMKKVRVNMGGESRSVVSRNRGKGKGKAKTKLEN
WATEIKDQVKNMEESVNLSKVEVKNQVKNMEESVDLSKVEVKNQGKNMEESVDLSKVETK
NQVKSMEESVDLSKVEIWNKVPDMDSRHSKDLSLILKNGNLLGKEVPAKPTITITAHNSA
KTTNDLQCDDLPDPSITPSRGWNSPHISDDELPDIPDDIAIRCNSPGTSTCGKLSGRTPC
KGARATLIVAPLSVISNWHNQLEDHIHENAHMEIYTYYGSSRTKDPTLLSKQDVVLTTYS
TLAADAKGKSTLLKVDWLRIVLDEGHAIRNPNAQQTKAICQLKAERKWILTGTPIQNSMK
DLWSLVNFLQINPFTDKQWWRRTIERPLDQGEESALRRVCHLMSAIALRRTKNQKINDKP
LVELPDRKVFVEHIKMSEEERNVYEAMQNEGKVIVSKYFRQGTLLHNYGEVLAILMRLRQ
LCCHPLLIAKAAAAVKEVLENVEAASSSGNDGLSTELREKLISALLMVLGSGSDEECAIC
LDMLKEPVITHCAHVYCQTCIGAVIRTDKPKCPLCRGDIDESKLLEVPPEQLQEPEDCED
DVITSENWKSSSKVDAVINALVTLREEDNTIRSLVVSQFTSLLSLLEIPLRARGFRFTRL
DGTMSLKMRIRAVEEFMDPSPVAPTIMLLSLKAGGVGINLTSASRVFLMDPAWNPAAEEQ
CFDRCHRLGQKRDVIITKFIVDDSVEVRMMELQEKKRKLMQGVFGASKKETAEQKRQNRI
KDIKSLMNF
NT seq 4530 nt   +upstreamnt  +downstreamnt
atggcaagaactaagcagacacatagacaggatggtgatggaaaggcgttacccagggca
gtgtttgggaataggagcaatggatcgaattcacttgggaggaagaaaaccaaagcaaag
aagaaatggaggaagagatccttctcaaatacctggaatagattcaacaattacgaggat
agatcaaactataagtggccgtacgctggtgctgctaatctggggcccatcgtcattggc
gacgacatgggacacgatgatctggatgatgaggtgttgctgggccatctccgtggaaac
attgttggtatccagtactacagaggcactgtgaacaacaatgagatggttgcgattgaa
agagaaccccacaataagtatgactgtaatgccatcaggatactgaatgtgggaggccaa
caggtgggacatatcaagcgagagttggccaaacccctcactcacatcatggacaatggc
tgggccagactggagggcatagtaccgttcggcagctccaacatgtacaccatgcctata
aacatgaccctgtggggtaaaccagagtttcgccagcaaacagcagacaagctgagtggg
caagggttcaaccccacagagccgtcttccaacctcgaccaggccggagggtcaggaatg
ggcatggccactccacgcagaacctacctgacgcctgaagagatgaaaaatgagcttgat
gaactatttgaaaatttggacgaaggagataaaactagcacagctaatccagcaaaggcc
atagtcacaccaatgtacacccaccagaagcaggccttaaactggatgatacagcgtgag
aatggtagcaagttacctcccttttgggaagaaaagaaaggccgctactttaactctgtc
accgtatttacaactgacaagcggccacagtcggtcaggggaggcatcctggctgatgac
atgggtctgggtaaaactctggagatgatcgccctgattatgaccaactttaaggatggt
cttcccctagctgtacctgtaccaggtagggtcagacagtcaaaacagaaaaggactcag
agactagactgttacaaattggaacctaaaccaatggcaatgaggaaggtgaatctaaag
agggagaaaatgtctgacttcatcgttgatgacagcaaaccaagcaccagctatgcacgt
aaatttgtgagaaatatatctgcaccaggcaatttgcagagatcacggttaccatacctt
cctgatgatgacatttctgactcggacagttctgtggactccgtggaagattatgatgat
tctcaacaatcaagcatggtaaagaaggaagacccagactttgtgccaaaaggttgtccc
tcaaaggagaacatggcaatgatgtcttcacgccctaaaagacagtctaaaaggaaagtc
agatacacagttaacggtgattctgatgtagcactccaggacagcccgagtcgctcgact
ccaaaagaagttgcaaaacatcacgtagctgcagcatcaagtgggaagttgactttttcc
tctggtcaggattcagctactttgtccagcccatcaactgagtatatcactccaacagga
gatctagacaataggttcatcaacagtgccaaacctgacaatgttttatcttcagtgacg
ggccacaagtcagcagaggatactgtagtgacacctagagcaatgacagaaacacaggac
agcaaagtaagggatgtgacgaagactgctaaagcggaacagattgatggattgaaaaag
gagatacagatgccctctataggagcaacacagagctgtgtgtcagtgggggaatcaatc
ctgcagcctaaagagggtagtgtggtgattgattcagatacagtgaaggattctacagta
cacacatgtacagctgtatctacgggggtggctgtactagaggggccagatctagaggtc
accgagcacggggataccggggaccaatgtataacaagtgaatctactgtcaattctata
gatatgggaacagagaaaccagtatcaggacaagaaaaaacaacagagccagaaatttca
aaaaacaagaaaccagcaaaatccaaagcaaggttggcacctgtgatgctggctcccacc
accagtggaagacccagacgcaatgcaaagaagcctgcccgatatgcagccagcagtgac
tctgaagtagaaaattcaccaatgaaaaaagtgcgtgtcaacatgggaggtgaaagccga
tctgtggtgtctaggaacagagggaaaggcaaaggtaaagcaaaaacaaaactggagaat
tgggctactgaaatcaaggaccaagtcaaaaacatggaggagagtgttaatctgtccaaa
gtagaagtcaagaaccaagtcaaaaacatggaggagagtgttgatctgtctaaagtagaa
gtcaaaaaccaaggcaaaaacatggaggagagtgttgatctgtccaaagtagaaacaaag
aaccaagtaaaaagcatggaggagagtgttgatctgtccaaagtagagatctggaataaa
gtcccagacatggacagtcgccacagcaaagatctttcgctgatcctgaagaatgggaac
ctgcttggaaaggaagttccagcgaagccaacaattactatcacggctcataactcagcc
aaaactacgaatgacttgcaatgtgatgaccttccagatccgtcgatcaccccttctcgt
ggatggaacagtcctcatataagtgatgacgagttacccgacattccagatgatatagca
atccgatgcaacagtccaggtacaagtacatgtgggaagttgtctgggcgaacaccttgc
aaaggagcgagggccaccctcatagtcgcgccactgtctgtgatcagtaactggcataac
cagctggaggatcatatacacgagaatgctcacatggagatctacacgtactacgggtca
tcacggaccaaggatcccacactcctcagtaaacaggacgtagtactcaccacctactcc
acactcgccgccgatgccaagggtaagagcaccctgctcaaggtggactggctgcgaatt
gtgttagacgagggccatgccatcaggaatcccaatgcccagcagaccaaggccatttgt
cagctcaaggcagaacgcaaatggatcctcacaggtacccccatacagaactccatgaag
gatctgtggtccctggtcaactttcttcagataaaccccttcacagacaaacaatggtgg
cgtcgcaccattgaacggccgctggaccaaggagaggaaagtgccctcaggagagtatgc
cacttgatgtcggccatcgccctgcgaagaaccaagaaccagaaaataaatgacaaacca
ctggtggaactgccagacaggaaggtgtttgtagagcacatcaaaatgtccgaggaggaa
agaaatgtttacgaagccatgcagaatgagggcaaggtcatagttagcaagtacttcaga
caggggacactactccacaactatggcgaggtgttagccatcctgatgagactcagacaa
ctgtgctgtcaccctttgctcattgctaaggcagctgctgctgtgaaagaagtcttagaa
aatgtggaagcagcatcttcatcaggaaatgatggcctgagtactgaattacgggaaaag
ctgattagtgccctgctaatggtactggggtctggatcagacgaggagtgtgctatctgt
ctggatatgctcaaagaaccagtcatcacacattgcgcccatgtctactgtcaaacctgt
ataggggcagtcatcagaactgacaagccaaaatgcccgttgtgccgtggagacattgac
gagagtaaattacttgaggtccccccagaacaactccaggaacctgaagattgtgaagat
gatgtgatcacatcagaaaactggaagtcaagttcaaaagtagacgccgtgatcaatgct
ctggtcacccttcgagaggaggataacaccattagaagtctggtggtctcacaatttaca
tctctccttagtcttctggaaataccactgcgagccagaggcttcagatttacacgcctg
gacggtaccatgagtctgaagatgaggataagggctgttgaagaattcatggaccccagt
cctgtggcacctactatcatgttactgtccctcaaggctgggggtgttggcattaatctc
acctcagcatctagggtgtttctcatggacccagcatggaatccggctgcagaggagcag
tgttttgatagatgtcatcgtctaggacaaaagagagacgtcattattacaaagttcatt
gtggatgattctgtggaggtgagaatgatggagcttcaggagaaaaagagaaagctgatg
caaggagtgtttggtgcatccaaaaaggagactgctgagcagaagaggcagaacagaatc
aaagatatcaaatcacttatgaatttctga

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