Mizuhopecten yessoensis (Yesso scallop): 110459436
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Entry
110459436 CDS
T05079
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1-like
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
myi
Mizuhopecten yessoensis (Yesso scallop)
Pathway
myi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
myi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110459436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
myi03019
]
110459436
Enzymes [BR:
myi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
110459436
Messenger RNA biogenesis [BR:
myi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
110459436
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
MMR_HSR1
TniB
ATP_bind_1
CbiA
nSTAND3
AAA_16
AAA_22
AAA_10
Sigma54_activat
AAA_24
AAA_18
GTP_EFTU
Motif
Other DBs
NCBI-GeneID:
110459436
NCBI-ProteinID:
XP_021367365
LinkDB
All DBs
Position
Unknown
AA seq
431 aa
AA seq
DB search
MTDEKKDATMRTEEYKLEAVSELRFEVETGSDASVQLDLLEGMAEVFGAELTKGRQITFE
EGAKVAVFTWHGCLIKLAGKTEVAYIAKETPMVMYINTHAALEQMRQKAEKEKTRGPRVM
VVGPTDVGKSTLCRLLLNYAARLGRAPIFVDLDVGQGDISIPGTLGSIVVERPSDIEEGY
NLNAPVVFHFGSSSPSHNTQLFKLLVSKMADTVNQKCDQSKKCCSSGVIINTGGWVRGAG
YDMLKHIAGCFEVDVIIVLDQERLYNELKRDMPDFVEVLLLPKSGGVVERNSSVRADDRD
LKVREYFYGLRKDNKDSFYPHPLHISFNDVKIYKIGAPALPDSCLPLGMKSQDNMLKLVP
VSPSNGLLHHVLSISMATSMEDNILESNILGHVVITGVDMEKQMFTALSPSAVTPPRNIW
LMSEIQFMDID
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgacagacgagaaaaaagatgcaactatgagaacggaagagtacaagctagaagcagtt
tcagagcttaggtttgaagtggaaactgggtctgatgcaagtgtacaactggatctactg
gaagggatggctgaggtttttggtgcagagcttaccaaagggagacaaatcacatttgaa
gaaggagcaaaagtagctgtgttcacatggcatggttgtcttatcaaactagccggtaaa
acagaagtggcatatattgccaaggagacaccgatggtgatgtacatcaacactcacgct
gccttggaacagatgagacagaaggcagaaaaggagaaaacacgtggaccaagggtaatg
gtggtaggacccaccgatgtcggtaagagtaccctgtgccgtcttctcctgaactatgcg
gctaggctgggacgtgcaccaatatttgtggacctggacgtgggacagggagatatttct
atacccggaacattaggcagtatagtggtagaaaggccgtcagacattgaggaaggatac
aaccttaatgctcccgtcgtgttccacttcggaagctccagtccttcacacaatacacaa
ctcttcaaacttctggtgtcaaagatggccgacacagttaaccaaaaatgtgaccagagc
aaaaaatgttgttcgagtggggtcatcatcaacacaggaggctgggtgaggggagctggc
tacgacatgctcaaacacattgctggctgcttcgaagttgatgttataatcgtgctagac
caggaaagactgtacaatgaattaaagcgcgatatgccagactttgtggaggtgcttctt
ctacccaagtctggaggggtggtggagagaaatagtagtgtgagggctgatgatcgggac
ttaaaggtccgggagtacttctacggcctacgcaaggacaacaaagacagcttctacccc
caccctctacacatcagcttcaacgatgttaaaatttacaaaataggagctcccgccctg
ccagactcctgtctacctttggggatgaaatcccaggacaatatgctaaaactcgtccct
gtttcaccaagtaacggcctactacaccacgttctgagtatcagtatggctactagcatg
gaggataatattctggagtcaaatattctaggacacgttgtcattactggtgtggacatg
gaaaaacagatgtttacagcgctctcaccctcagccgtcactcctcctcgtaacatctgg
ctgatgtccgagatccagtttatggacattgattga
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