Mizuhopecten yessoensis (Yesso scallop): 110460770
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Entry
110460770 CDS
T05079
Name
(RefSeq) ATP-dependent RNA helicase DDX39A-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
myi
Mizuhopecten yessoensis (Yesso scallop)
Pathway
myi03013
Nucleocytoplasmic transport
myi03015
mRNA surveillance pathway
myi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
myi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110460770
09122 Translation
03013 Nucleocytoplasmic transport
110460770
03015 mRNA surveillance pathway
110460770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
myi03019
]
110460770
03041 Spliceosome [BR:
myi03041
]
110460770
Enzymes [BR:
myi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110460770
Messenger RNA biogenesis [BR:
myi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110460770
Spliceosome [BR:
myi03041
]
Complex C
Other components
EJC/TREX
110460770
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
110460770
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
P-loop_SecA
ZNHIT3_C
Motif
Other DBs
NCBI-GeneID:
110460770
NCBI-ProteinID:
XP_021369566
LinkDB
All DBs
Position
Unknown
AA seq
427 aa
AA seq
DB search
MDPMENTDQELDYIEESEDETTTPEKTDPIPGGSMRGEYVSMHSSGFRDFLLKPELLRSI
ADCGFEHPSQVQHECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQLEPVDGQVSIIVLA
HIRELAFQIADDYRKLCRHINNVKVAVFFGGIPIKRDEEVLSKNCPHIVIGTPGRILALA
RKGALKLGNIRHFVLDECDKMLEVLGMRKDVQEIFKMTPHEKQVMMFSATLGKESRLVCK
RFMQDPLEVYVDDCSKLTLHGLRQFYVKVSEKEKNRQLMTLLDALEFNQVIIFVKSVQRC
KALTQLLMEQNFPAITIHSAMLQEERLSRYKQFKDFEKRLLVATNLFGRGMDIVGVNIVF
NYDMAEDSDTFLHRVARAGRFGTKGMAITFISNETDAAIMNAVQARFEVNVPVLPEEIDT
SSYLPGK
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggatcccatggagaacacagatcaagaactggattatattgaggagtcggaagatgaa
accactacccccgagaaaactgaccccatccccggcggcagtatgagaggggaatatgtt
tctatgcacagttcagggtttagagacttccttctcaaaccggaactgctcagatcgatc
gccgactgtggatttgaacatccttcacaagttcagcacgagtgcattcctcaagcgatt
ttgtctatggatgtgttatgccaagcgaagtctggtatgggaaagaccgctgtctttgta
ctggcgacacttcagcagctggagcctgtggacgggcaggtctccatcattgttttggca
catatccgagaacttgccttccagatcgcagacgactaccgaaagttatgtcgtcatata
aacaatgtgaaggtcgctgtattcttcggaggaatccctatcaaacgtgacgaggaggtg
ctgtccaagaactgcccccacattgtcataggaacccctggtcgtatcttagccctggct
cggaaaggggcactgaagttagggaacatccgccattttgttctagatgaatgtgacaag
atgctagaagtattaggcatgcgaaaagatgtccaggagatattcaagatgacgccacat
gagaagcaggtcatgatgttcagcgccaccttggggaaggaatctcgtcttgtctgcaag
aggttcatgcaggatcccttggaggtttatgtagatgactgctccaagttgaccttgcac
ggccttcgacagttctatgtcaaagtctcagagaaggaaaagaacagacaactgatgacg
cttctcgatgctctggaatttaatcaggttatcatctttgttaagtccgtccagagatgt
aaagctctaacccagttgttgatggaacagaacttccccgccataaccattcacagcgct
atgctacaggaggaaaggttatctcgttacaaacagttcaaagattttgaaaagcggctt
ttagtggccacaaatctgttcggcagagggatggacattgttggagtcaacattgtcttt
aattacgacatggcagaggattcagacacatttcttcacagggtggctagagccgggaga
tttggcacgaagggtatggcaatcacattcatctccaacgaaacggatgccgccataatg
aacgcggtacaggcgagatttgaggtcaatgtacctgtcttacctgaggaaatcgacacc
tcatcataccttccgggaaaatga
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