Mizuhopecten yessoensis (Yesso scallop): 110462262
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Entry
110462262 CDS
T05079
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
myi
Mizuhopecten yessoensis (Yesso scallop)
Brite
KEGG Orthology (KO) [BR:
myi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
myi03016
]
110462262
Enzymes [BR:
myi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
110462262
Transfer RNA biogenesis [BR:
myi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
110462262
Prokaryotic type
tRNA splicing ligases
110462262
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
110462262
NCBI-ProteinID:
XP_021371838
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MAVRTYQEELGFLEKMDANTWRIKKGFVPNMKVEGIFYANESLEKLMFDELKQSCRSQGY
GGFLPGMKQIGNVAALPGIVGKSIGLPDVHSGYGFAIGNMAAFDMGNPEAVVSPGGVGFD
INCGVRLLRTNLMEEDVQPVKEQLAQCIFDHIPVGVGSKGIIPMTAQNLEEALEMGMDWS
LREGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIYN
EAAAKKMGIECKGQVCMMIHCGSRGLGHQVATDALVAMEKAMKRDKIDVNDRQLACARIN
SAEGQDYLKGMAGAANYAWVNRSSMTFLSRQAFSKMFNTSPDDLDMHVIYDVSHNIAKVE
EHFLDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
VETFGTTCHGAGRALSRAKSRRNLDYTDVLNSLAEKGISIRVASPKLVMEEAPQSYKNVT
DVVDTCHRAGISQKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgcggacatatcaagaggagctggggttcttagagaagatggatgctaataca
tggcgcataaagaaaggctttgtacccaatatgaaggttgagggaatcttttatgcaaat
gaatccttagaaaagcttatgtttgatgaattgaaacaatcctgtcgttcacaaggctat
ggaggatttctacctggaatgaaacagattggcaatgtagcggctctgcctggaattgtt
gggaaatccataggtctacctgatgtccactctggttatggatttgcaataggtaatatg
gcagcatttgacatgggaaatcctgaggcagttgtctcccctggaggtgtaggttttgac
atcaattgcggagtccggctgctacggacaaacctgatggaggaggatgtccaaccggtc
aaggagcagcttgcccagtgtatttttgaccatataccagtgggtgttggctctaagggc
atcattcccatgacagcacagaacttggaggaagcattagaaatgggaatggactggtca
ctgcgagaaggatatgcctgggctgaagacaaagaacactgcgaggaatatggacgtatg
ctacaggcagacccaaacaaagtcagtgctcgggccaagaaaagaggtctgccacagctt
ggaacactcggagctgggaaccattatgctgaaatacaagtagtggatgaaatttacaat
gaagccgcagccaagaaaatgggcattgagtgcaaaggtcaagtttgtatgatgatccat
tgtggaagtcgaggacttgggcatcaggtagcaacagatgcccttgttgccatggagaag
gctatgaagcgtgacaagatagatgtgaatgatcgacagttggcctgtgctaggattaac
tcggcagaaggacaggattatctcaagggaatggcgggggctgccaactacgcatgggtc
aaccgctccagtatgacctttctctcccgacaggctttctctaaaatgttcaacacctca
ccagatgacctagacatgcatgtgatatatgacgtgtcacacaacatagccaaagtggag
gaacactttttggatgggaagcagaagacgctactggtacacaggaagggttcgacacgt
gctttcccacctcatcatcccctcatccctgtggactaccagttgacaggccagcctgtt
ttgatcggaggtaccatggggacctgtagctatgtactgacaggtacagagcagggtatg
gtggaaactttcggaacaacttgtcatggcgcgggtcgggctttatctcgtgctaagtcc
cgacgtaatctggattacacagatgtcctaaattccctggcggagaagggaatcagtatc
cgagtggcctccccaaaacttgtcatggaagaggctccacaatcctacaaaaatgttaca
gatgttgttgatacatgtcatcgggctggcatcagccaaaagtgtataaaactgcgtcca
atagctgtgataaaaggctga
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