Mizuhopecten yessoensis (Yesso scallop): 110465593
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Entry
110465593 CDS
T05079
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
myi
Mizuhopecten yessoensis (Yesso scallop)
Pathway
myi03013
Nucleocytoplasmic transport
myi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
myi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110465593
03015 mRNA surveillance pathway
110465593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
myi03019
]
110465593
Enzymes [BR:
myi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
110465593
5.6.2.5 RNA 5'-3' helicase
110465593
Messenger RNA biogenesis [BR:
myi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110465593
mRNA cycle factors
Common to processing body (P body) and stress granule
110465593
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
SLFN-g3_helicase
NPHP3_N
Helicase_RecD
UvrD-helicase
AAA_16
ATPase
nSTAND3
AAA_22
SRP54
PhoH
Motif
Other DBs
NCBI-GeneID:
110465593
NCBI-ProteinID:
XP_021377203
LinkDB
All DBs
Position
Unknown
AA seq
1112 aa
AA seq
DB search
MMSVDAYAPNSQTLTFLDTEEDLLGADTQGTDFDFTDFTLPSQTQSQTQASQLEPGQSQS
QQPNGVEIPLQNGLDKGIGVITQGVGELNFEEEEEEQFYMKDLPKHACSYCGIHDPACVV
LCNSTKKWFCNGRGNTSGSHIINHLVRAKAKEVTLHKDGPLGETVLECYNCGCRNVFLLG
FIPAKADSVVVLLCRQPCATLTNLKDMNWDPSQWQPLIQDRQFLAWLVKVPSDQEQMRGR
QISAQQINKLEELWKDNPDATLEDLEKPGVDEEPQQVLLRYDDAYQYQNIFGPLVKLEAD
YDKKLKESQTQDNIVVRWDVGLNKKRITYFHLPKANEEMKLMHGDELRIRYMGELHKPWS
GVGHVIKIPDNHSDEVAIELKSNAGVPTDCTHNFVVDFVWKSTSFDRMQAALKTFAVDET
SVWGYIYHKLLGHEVEDVVIKCQLPKRFSALSLPELNHSQVYAVKTVLQRPLSLIQGPPG
TGKTVTSATVVYHLAKQNSGQVLVCAPSNIAVDQLTEKIHRTGLKVVRLCAKSREAIESP
VSFLSLHNQIRNIESVPELQKLQQLKDETGELSSADEKRYRSLKKQCEKELLQHADVICC
TCVGAGDPRLGKMQFRSVLIDESTQATEPECMIPVILGCRQLILVGDHCQLGPVVMCKKA
ARAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVAPADRTRKNL
DIPWPQADKPMFFYTTSGQEEISSSGTSYLNRTEAVNVEKIATRFLRSSIKPEQIGIITP
YEGQRAYIVQYMQYSGSLNKKLYQEIEVASVDAFQGREKDFIILSCVRSNEHQGIGFLND
PRRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLTYYKEQKCLVEGPLNNLKESLIQFSK
PRKLVNSANPGGRFMSNIMFDAREVLIPGSVYDRTQGYREPAVVRHHDQLSYIGPERAYT
GPALNLPVPVNMFIPPMPQPFNTQQPVHMNKNNPRQNQRGFNYRQKPPRYSNTQTTQGSQ
MSQNGGSQSQASQDGISQPFSQGPLTQGPMSMSQSFQMSQPGLSGLSQPELSQDSFLADD
FKSQADGMLSQDSTYQGDRMFYASQLSQGPFN
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgatgagtgttgacgcgtatgccccgaattcccaaacactcacgttcctggacaccgag
gaagatcttctcggagcggacacacaaggcacagacttcgactttacagactttacgttg
ccatcacaaactcagtcgcagacacaagcctcccagctagaaccaggacagagtcaaagt
cagcaacccaatggtgttgaaataccactacaaaatggactggataaaggcattggagtc
atcacgcagggagtgggtgagctcaacttcgaggaggaggaagaggaacagttttatatg
aaagatctccccaaacatgcttgctcgtactgtggaatacacgacccggcgtgtgtggtg
ttgtgcaactcaacaaagaagtggttctgtaatggtcgtggcaacacttcaggcagccac
atcatcaatcacttagtgagagccaaggcaaaggaggtgacactgcacaaggatggaccc
ctcggggagactgtcctcgagtgctacaactgtggctgtcgtaacgtcttcctgctcggc
ttcattccagccaaggctgactctgtggtggtactgctgtgtagacagccctgtgccaca
ctcaccaacctcaaggacatgaactgggaccccagccagtggcagcccctgatccaggat
cgacaattcctagcctggttggtgaaggtgccttctgaccaggagcagatgaggggacga
cagatctctgcccagcagatcaacaaactggaggagttgtggaaggacaaccctgatgcc
acactggaggacttagagaagcctggagtggatgaggagccccagcaggtcctcctcagg
tatgatgatgcttaccagtaccagaacatctttggtcccctggtcaagctggaggctgac
tacgataagaagctaaaggagtcccagacccaggataacattgtggtgcgatgggatgtt
ggcctgaacaaaaagcgtatcacctacttccaccttcccaaggccaatgaagaaatgaag
ctgatgcatggggatgagttgcggattcgctacatgggagaacttcacaagccctggtct
ggtgtagggcatgtcatcaagataccagacaaccacagcgacgaggtggccatagagttg
aagagtaacgctggtgtccccactgactgtacacacaactttgttgtggactttgtctgg
aaatcaacatcctttgatagaatgcaggcagctctgaagacatttgcagtagatgagaca
tcggtgtggggctacatataccacaaactgctgggacacgaggtggaggatgttgtcatc
aaatgtcagcttcccaagcgctttagtgccctcagcctgccggagcttaaccactcccag
gtgtacgctgtcaagactgtcctacaacgacccctcagtcttatccagggtcctccagga
actggcaagactgtaacctcggcaactgtggtgtaccacctggccaaacagaacagtggc
caggtactggtgtgtgccccatccaacattgctgttgaccagctcactgagaagatccat
aggactggacttaaggtggtacgcctttgtgccaagagtcgtgaagccattgagtcaccc
gtctccttcctgtccctacacaaccagatcaggaacatcgagagtgtaccagagctacag
aagctacaacagcttaaagatgaaactggtgaactgtcgtctgctgatgagaagaggtac
cgctccctcaagaagcagtgcgagaaagaattacttcagcatgcggacgtgatctgttgt
acctgtgtcggagcaggggaccccagacttgggaagatgcagttccgctccgttcttatt
gacgagagcacccaggccacagaacctgagtgtatgatacctgtgatcctaggctgcaga
cagctgatcctggtcggggaccactgccagcttggcccagtggtgatgtgtaagaaggca
gcccgtgctggtctgtctcagtccctgtttgagcgcttggttgtcctaggcatccgccct
atcaggctccaggtccagtacagaatgcaccctgctctcagcgccttcccctcaaacatc
ttttatgaaggctccctgcagaatggggttgccccagctgatcgtacaaggaagaatctg
gacattccttggcctcaggcagacaagcccatgttcttttacacgacgtccggccaagag
gagatatctagctctggcacttcctatctcaacagaactgaggcagtcaatgtagagaag
attgcaacccgtttcctgcggtcaagcatcaagccagagcagattggaatcatcacgcca
tacgagggacagcgagcatacattgtgcagtacatgcagtacagtggatctctcaacaag
aaattgtaccaggaaattgaggttgcgagtgtggatgctttccaagggagagagaaagac
ttcatcattttgtcatgtgtacgatccaacgaacaccagggaattggatttctgaatgat
ccacgtcgtctgaatgtagctctgactcgagccaagtacggaatcatcatagtgggtaac
cctaaagtgctgtctaagcaacccctgtggaaccacctgttgacatattacaaggagcag
aaatgtctggtggaaggccctctcaacaacctcaaggagagcctcatacagtttagcaag
ccacgcaagctggttaactccgccaaccctggcggtagattcatgagtaacatcatgttt
gatgcgagagaagtgctcatccctggtagtgtgtatgacagaacccagggatatcgtgag
cctgctgtggtgcgtcaccatgaccagctgagctacatcggaccagagcgtgcttacaca
ggccccgccctcaacctgcctgtgcccgtgaacatgtttatacctccgatgccacaaccc
ttcaacacccaacaaccggtccacatgaacaagaataatccccgacagaaccagcgtggc
ttcaactaccgccagaagcctcccagatacagcaacacacagaccacccagggctcacag
atgagtcagaacgggggcagccaaagccaggccagtcaggatggcatatcccagccattt
tcgcagggtcctctgacccaagggcccatgtcaatgagccagtcgttccagatgagccag
cctggcctttcaggcttgtcacagccagaactatcccaggacagtttcctggcggatgac
ttcaagtcgcaggctgatggcatgttgtcccaggactcaacataccagggcgaccgcatg
ttctatgcctcgcagctgtcacaaggtcctttcaactag
DBGET
integrated database retrieval system
