Mycobacterium sp. djl-10: BCA37_23825
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Entry
BCA37_23825 CDS
T10620
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
myj Mycobacterium sp. djl-10
Pathway
myj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
myj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BCA37_23825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
myj03019
]
BCA37_23825
03009 Ribosome biogenesis [BR:
myj03009
]
BCA37_23825
Enzymes [BR:
myj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BCA37_23825
Messenger RNA biogenesis [BR:
myj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BCA37_23825
Ribosome biogenesis [BR:
myj03009
]
Prokaryotic type
rRNA helicases
BCA37_23825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
HEM4
Flavi_DEAD
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ANW66197
LinkDB
All DBs
Position
complement(4941942..4943666)
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AA seq
574 aa
AA seq
DB search
MSTPEPDQPTPSSDAAAAPETFADLQIHPAVLEAVSEVGYETPSAIQAATIPALLAGSDV
VGLAQTGTGKTAAFAIPILSKIDTTSRNTQALVLAPTRELALQVAEAFSRYGAKLRVNVL
PVYGGSSYVPQIAGLKRGAQIVVGTPGRVIDHLEKGNLDLSHLDYLVLDEADEMLQMGFA
EDVERILADTPEYKQVALFSATMPPAIKKITSKYLHDPVEVMVKSKTQTAENITQRYLQV
SYPRKMDALTRLLEVEQGDAMIVFVRTKQATEEVAEKLRARGFAAAAINGDIPQAVRERT
IAQLKDSSIDILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTAFL
FVTPRERHLLGAIERVTRQKLVEIDLPSVEDVNEKRVQKFRDSITDALAKPGIDLFRALI
EGYERDHDVPMADIAAALALQSRDGEEFLLTEPPPEKRRERADRPPRPDKPMRRDGGFAT
YRIDVGKRHKVMPGAIVGAIANEGGLHRSDFGHITIKPDFSLVELPPNLPAETLQKLART
RIQGNLINLQPDDGAAPRRSGPPKRDTKKYRKNP
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgagcactccggaacccgatcagcccaccccgtcctccgacgccgccgcggcgccggag
accttcgctgatctgcagatacacccagcggtcctggaggcggtctccgaggtcggctac
gaaaccccgtccgccatccaggcagccaccatcccggccctgctggcgggctccgatgtg
gtcggattggcgcagaccggcaccggcaagacggccgcgttcgccatccccatcctgagc
aagatcgacaccaccagccgcaacacccaggcgctggtgctggcccccacccgcgagctg
gcgctgcaggtggccgaggcgttcagccggtacggcgccaagctgcgggtcaacgtgctg
ccggtgtacggcggctcgtcctacgttccgcagatcgccggcctcaagcgcggcgcccag
atcgtggtgggcacccccgggcgcgtcatcgaccacctggagaagggcaacctggacctc
tcgcacctggactacctggtgctcgacgaggccgacgagatgctgcagatgggcttcgcc
gaggatgtcgagcgcatcctggccgacaccccggagtacaagcaggtggcgctgttctcg
gcgaccatgccgccggcgatcaagaagatcacctccaagtatctccacgacccggtggag
gtgatggtcaagtccaagacgcagaccgccgagaacatcacgcagcgctacctgcaggtg
tcctacccgcgcaagatggacgcgctcacccgacttctcgaggtcgagcagggcgacgcg
atgatcgtcttcgtgcgcaccaagcaggccaccgaagaggtggccgagaagctgcgggcc
cgcggcttcgccgccgccgccatcaacggtgacatcccgcaggcggtgcgcgagcgcacc
atcgcccagctcaaggacagctcgatcgacatcctggtggccaccgatgtggcggcccgc
ggactggacgtcgaacgcatctcgcacgtggtgaacttcgacatcccgcacgacccggag
tcctatgtgcaccgcatcggacgcaccggccgcgcgggccgctccggcaccgcgttcctg
ttcgtgacgccgcgggaacggcacctgctgggcgcgatcgaacgggtgacccggcagaag
ctcgtcgagatcgatctaccgtcggtggaggacgtcaacgagaagcgggtgcagaagttc
cgtgactcgatcaccgatgcgctggccaaaccgggaatcgacctgttccgcgccctgatc
gagggctacgagcgtgatcacgacgtgccgatggccgacatcgccgcggcgctggcgctg
cagagccgcgacggggaagagttcctgctgaccgagccgccgccggagaagcgccgcgag
cgtgccgaccgcccgccgcggccggacaagccgatgcgccgcgacggtggcttcgccacg
taccggatcgacgtcggcaagcggcacaaggtgatgccgggtgccatcgtgggcgccatc
gccaacgaaggcgggctgcaccgcagcgatttcgggcacatcaccatcaagccggacttc
tcgctggtggagttgccgccgaacctgccggccgagacgctgcagaagttggccaggacc
cgcatccagggcaacctgatcaacctgcagcccgatgacggcgccgcaccccgccgttcc
ggacctcccaaacgcgacaccaagaagtaccgcaagaacccatga
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