Myxococcus sp. SDU36: KGD87_17380
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Entry
KGD87_17380 CDS
T11750
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
myk Myxococcus sp. SDU36
Pathway
myk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
myk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KGD87_17380 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
myk03021
]
KGD87_17380 (rho)
03019 Messenger RNA biogenesis [BR:
myk03019
]
KGD87_17380 (rho)
Transcription machinery [BR:
myk03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
KGD87_17380 (rho)
Messenger RNA biogenesis [BR:
myk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KGD87_17380 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
Spore_III_AA
S1CSD-TOTE-2
AAA_22
NACHT
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
WIG99009
LinkDB
All DBs
Position
complement(4445606..4447234)
Genome browser
AA seq
542 aa
AA seq
DB search
MRKARTSREKAADTEVAVEADTEKPRRKRAAKTVERDEAEKPAPRARRSAARRDDEPGAE
AEEAPAEPPRPVLTPISRPVRDDDLQEARISGEAEEPAATLPPPPEPPEAPAITEVTRDG
EPMQVIKLNDLKRMKITDLSKMAQDVGVEGYQGLKKQDLIFALLGGIADKRFEVHAEGVM
ELLSDGFGFLRSADSDYQPSPDDIYVSPSQVRRFNLRPGDTVTGPIRQPREGERFFALQK
VDKVNFADPMSDAARDRILFDNLTPLYPTRKLKLEHEASEMTTRIIDMFCPIGLGQRCLI
VAPPKAGKTVLLQNIAHAISRNHPDVYLIVLLVDERPEEVTDMERNVRGEVVSSTFDEPA
TRHVQVAEMVIDKAKRLVEQKYDVCILLDSITRLARAYNTVVPASGKILSGGVDANALHK
PKRFFGAARNIEEGGSLTIIGTALIDTGSRMDEVIFEEFKGTGNSEIVLDRKLMEKRIFP
TLDINKSGTRKEELLLGPGDLVRITALRQVLHPFTPIDAMEFVLKHMRPTPSNADFLGSM
NR
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaaagcccgtacttcgagagagaaggccgctgacaccgaggtcgccgtcgaggcg
gacacggagaagccccgccgcaagcgcgcagcgaagacggtggagcgggacgaggccgaa
aagcccgccccgcgcgcccgtcgcagcgctgcccgccgcgacgacgagcctggcgccgag
gccgaggaggcccccgccgagccgccccgtccggtgctcacccccatctcccgcccggtg
cgggacgacgacctccaggaggcccgcatctccggcgaggccgaagagccggccgccacc
ctgccgcctcctccggagccgcccgaggcccccgccatcacggaagtcacccgcgacggc
gagcccatgcaggtcatcaagctcaatgacctgaagcggatgaagatcaccgacctctcg
aagatggcccaggacgtgggcgtcgaggggtaccagggcctgaagaagcaggacctcatc
ttcgcgctgctgggcggcatcgccgacaagcgcttcgaggtccacgcggaaggcgtgatg
gagctgctcagcgacggcttcggcttcctgcgcagcgcggacagcgactaccagcccagc
ccggacgacatctacgtgtccccgtcgcaggtgcgccgcttcaacctgcgccccggcgac
acggtgacgggccccatccgccagccccgcgagggcgagcgcttcttcgcgctccagaag
gtggacaaggtcaacttcgcggacccgatgtcggacgcggcgcgcgaccgcatcctgttc
gacaacctcacgccgctctatccgacgcgcaagctcaagctggagcacgaggcgtcggag
atgaccacgcgcatcatcgacatgttctgccccattggcctgggccagcgctgcctcatc
gtggcgccgccgaaggccggcaagacggtgctgctgcagaacatcgcgcacgccatcagc
cgcaaccacccggacgtgtacctcatcgtgctgctcgtggacgagcgcccggaagaggtg
acggacatggagcgcaacgtgcgcggcgaggtggtgtcctccaccttcgacgagcccgcc
acgcgccacgtgcaggtggcggagatggtcatcgacaaggccaagcgcctggtcgagcag
aagtacgacgtctgcatcctgctggactccatcacccgtctggcgcgcgcctacaacacg
gtggtgcccgcgtccggcaagattctgtccggcggcgtggacgccaacgcgctccacaag
cccaagcgcttcttcggcgccgcgcgcaacatcgaggagggcgggtcgctgaccatcatc
ggcaccgcgctcatcgacaccggcagccgcatggacgaggtcatcttcgaggagttcaag
ggcacgggtaactccgaaatcgtcctggaccggaagctgatggagaagcgcatcttcccg
acgctggacatcaacaagtccggtacgcgcaaggaggagctgctgctcggcccgggcgac
ctggtgcgcatcaccgccctgcggcaggtgctccacccgttcacccccatcgacgcgatg
gagttcgtgctcaaacacatgcggcccaccccgtcgaatgcggacttcctcgggtcgatg
aaccggtag
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