Mycetocola zhujimingii: C3E77_06150
Help
Entry
C3E77_06150 CDS
T05409
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
myl
Mycetocola zhujimingii
Pathway
myl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
myl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3E77_06150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
myl03019
]
C3E77_06150
03009 Ribosome biogenesis [BR:
myl03009
]
C3E77_06150
Enzymes [BR:
myl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C3E77_06150
Messenger RNA biogenesis [BR:
myl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C3E77_06150
Ribosome biogenesis [BR:
myl03009
]
Prokaryotic type
rRNA helicases
C3E77_06150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
adh_short
HEM4
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AWB86235
UniProt:
A0A2U1TCG9
LinkDB
All DBs
Position
complement(1302872..1304671)
Genome browser
AA seq
599 aa
AA seq
DB search
MTSSDTTTLSEAETAREALTFSDLGLSDSVLKGLKAVGYETPSAIQAATIPVLLEGRDVV
GLAQTGTGKTAAFALPILSRLDMSQKTPQALVLAPTRELALQVCEAFESYAGGMRGVHVL
PVYGGQGYGVQLSALRRGVHIVVGTPGRIMDHLEKGTLDLSQLKYLVLDEADEMLKMGFA
EDVETILADTPEDKQVALFSATMPAQIRRISKKYLHDPEEITVKNKTTTSANTTQRYLMV
SYPQKVDALTRILEVENFEGMIVFTRTKNETETLAEKLRARGYAAAAINGDVQQAQRERT
VEQLKSGKLDILVATDVAARGLDVERISHVVNFDIPIDTESYVHRIGRTGRAGRSGAAIS
FVTPRERRLLTAIEKATRQPLTQMQLPSVEDVNVTRLARFDDAITEALTQSNRIETFRDI
INHYVEHHDVPEADVAAALAVVAQGETPLLLTAEDERNQRRDRERMERDDRAARGDRNDR
PARGNDRNDRPARGERPERRPRSSDQQLSAYRIEVGKRQKVEPRQIVGALANEGGLSRED
FGGIKILPDFSIVELPANLSPETLEKLKDTRISGKLIELRPDRSASARREDKDTRKPRS
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcttctgacacgacgacgctgagcgaggcagaaactgcccgcgaagctctcaca
ttttccgatcttggactgagcgactcagttcttaaaggcctcaaggcagtcgggtacgaa
accccctccgctattcaggcagctaccattcccgtcctcctcgagggccgcgacgtcgtt
ggcctcgcgcagacgggcacgggaaagaccgcagcgttcgccctgccgatcctttcccgc
ctcgacatgtcgcagaaaaccccgcaggcgctcgtcctcgcaccgacccgtgagctcgcg
ctccaggtctgtgaggcattcgagagctacgccggtggcatgcgcggcgtgcacgttctc
ccggtctacggcggacagggctacggcgttcagctgtcggctctccgtcgcggtgtccac
attgtcgtcggtacgcccggccgcatcatggaccacctggagaagggcacactcgacctc
tcgcagctcaagtacctcgtgctcgatgaggccgacgagatgctcaagatgggcttcgcc
gaagacgtagagacgatcctcgccgacacccccgaagacaagcaggtggcactgttctcc
gccaccatgccggcgcagatccgacggatctccaagaagtacctgcacgaccccgaagag
atcaccgtcaagaacaagacgacgacctcagcgaacaccacacagcggtacctcatggtg
tcgtacccgcagaaggtcgatgcgctcacccgcatcctcgaggtcgagaacttcgagggc
atgatcgtcttcacccgcaccaagaacgagaccgagaccctcgccgaaaagctccgtgcc
cgcgggtacgccgcagcggcgatcaacggtgacgtgcagcaggcccagcgcgagcgcacc
gtcgaacagctcaagtcgggcaagctcgacatcctcgttgcaacggatgtcgcggctcgt
ggccttgacgtcgagcgcatcagccacgtggtcaacttcgacatcccgatcgacaccgag
tcctacgtgcaccgcatcggccgcaccggccgcgctggccgatcgggcgcggcgatcagc
ttcgtcaccccgcgtgaacgccgcctgctcaccgcgatcgagaaggcgacccgtcagccg
ctcacgcagatgcagctgccgagcgtcgaggacgtcaacgtcacgcgcctcgcgcgattc
gacgacgccatcaccgaggcgctgacccagtcgaaccggatcgagacgttccgcgacatc
atcaaccactacgtcgaacaccacgatgtgcctgaggcagatgtcgccgcggctctcgct
gttgtcgcacagggcgaaacgcccctcctgctgacggcagaggacgagcgcaaccagcgc
agggaccgcgagcggatggagcgcgacgaccgtgccgcccgaggcgaccgtaatgaccgc
cccgcccgtggaaacgacaggaacgaccgcccggcacgcggcgagcgtcccgagcgccgt
ccgcggtcgagcgaccagcagctttccgcataccggatcgaggttggcaagcgccagaag
gtcgaaccgcgccagatcgtcggtgccctcgcgaacgagggtggactaagccgcgaagac
ttcggcgggatcaagatcctgcccgacttctcgatcgtcgagctgccggccaacctctcc
cccgagacgctggaaaagctcaaggacacgcggatcagcggcaagctgatcgaactccgt
cccgaccgctcggcatccgcccggcgcgaagacaaggacacgcgcaagccgcgaagctga
DBGET
integrated database retrieval system
