Pseudomyxococcus hansupus: A176_001280
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Entry
A176_001280 CDS
T04077
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
mym
Pseudomyxococcus hansupus
Pathway
mym03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mym00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A176_001280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mym03021
]
A176_001280
03019 Messenger RNA biogenesis [BR:
mym03019
]
A176_001280
Transcription machinery [BR:
mym03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
A176_001280
Messenger RNA biogenesis [BR:
mym03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
A176_001280
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
S1CSD-TOTE-2
Spore_III_AA
OB_RNB
AAA_22
NACHT
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
AKQ64368
UniProt:
A0A0H4WS12
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All DBs
Position
1493403..1495022
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AA seq
539 aa
AA seq
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MRKARTSREKAADTDVAVEADAEKPRRKRAAKTVEREEAEKPARARRSTRRDEEVSAEAE
EAPAEPPRPVLTPISRPVRDDDLQEARISGEEEPAASLPPPPEAPEAPAITEVTRDGEPM
QVIKLNDLKRMKITDLSKMAHDVGVEGYQGLKKQDLIFALLGGIADKRFEVHAEGVLELL
SDGFGFLRSADSDYQPSPDDIYVSPSQVRRFNLRPGDTVTGPIRQPREGERFFALQKVDK
VNFADPMSDAARERILFDNLTPLYPTRKLKLEHESSEMTTRIIDMFCPIGLGQRCLIVAP
PKAGKTVLLQNIAHAISRNHPDVYLIVLLVDERPEEVTDMERNVRGEVVSSTFDEPATRH
VQVAEMVIDKAKRLVEQKYDVCILLDSITRLARAYNTVVPASGKILSGGVDANALHKPKR
FFGAARNIEEGGSLTIIGTALIDTGSRMDEVIFEEFKGTGNSEIVLDRKLMEKRIFPTLD
INKSGTRKEELLLGPGDLVRITALRQVLHPFTPIDAMEFVLKHMRPTPSNADFLGSMNR
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaaagcccgtacttcgagagagaaggctgctgacaccgacgtcgccgtggaggcg
gacgcggagaagcctcgccgcaagcgtgcggcgaagacggtggagcgggaggaggccgag
aagcccgcccgtgcccgccgcagcacccgtcgcgacgaggaagtcagcgccgaggccgag
gaggcccccgccgagccgccccgtcccgtcctcacccccatctcccgcccggtccgggac
gatgacctccaggaggcccgcatctccggtgaggaggagccggccgcctccctgccgcct
cctcccgaggcccccgaggccccggccatcacggaagtcacccgcgacggcgagccgatg
caggtcatcaagctcaatgacctgaagcggatgaagatcacggacctgtccaagatggcc
cacgacgtgggcgtcgagggctaccagggtctgaagaagcaggacctcatcttcgcgctg
ctgggcggcatcgccgacaagcgcttcgaggtccacgcggagggcgtgctggagctgctc
agcgacggcttcggcttcctacgcagcgcggacagcgactaccagcccagcccggacgac
atctacgtgtccccgtcgcaggtgcgccgcttcaacctgcgcccgggcgacacggtgacg
ggccccatccgccagccccgcgagggcgagcgcttcttcgcgctccagaaggtggacaag
gtcaacttcgcggacccgatgtcggacgcggcgcgcgagcgcatcctgttcgacaacctc
acgccgctctatccgacgcgcaagctcaagctcgagcacgaatcgtcggagatgaccacg
cgcatcatcgacatgttctgccccattggcctgggccagcgctgcctcatcgtggcgccg
cccaaggccggcaagacggtgctgctgcagaacatcgcgcacgccatcagccgcaaccac
ccggacgtctacctcatcgtgctgctcgtggacgagcgcccggaggaagtgacggacatg
gagcgcaacgtgcgcggcgaggtggtgtcctccaccttcgacgagcccgccacgcgccac
gtgcaggtcgcggagatggtcatcgacaaggccaagcgcctcgtcgagcagaagtacgac
gtctgcatcctgctggactccatcacccgtctggcgcgcgcctacaacacggtggtgccc
gcgtccggcaagattctgtccggcggcgtggacgccaacgcgctccacaagcccaagcgc
ttcttcggcgccgcgcgcaacatcgaggagggcggctcgctgaccatcatcggcaccgcg
ctcatcgacaccggcagccgcatggacgaagtcatcttcgaggagttcaagggcacgggt
aactccgaaatcgtcctggaccggaagctgatggagaagcgcatcttcccgacgctggac
atcaacaagtccggcacgcgcaaggaagagctgctgctgggcccgggcgacctggtgcgc
atcaccgccctgcggcaggtgctccacccgttcacgccgattgacgcgatggagttcgtg
ctcaaacacatgcggcccaccccgtcgaatgcggacttcctcgggtcgatgaaccggtag
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