Pseudomyxococcus hansupus: A176_002996
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Entry
A176_002996 CDS
T04077
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mym
Pseudomyxococcus hansupus
Pathway
mym03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mym00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A176_002996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mym03019
]
A176_002996
03009 Ribosome biogenesis [BR:
mym03009
]
A176_002996
Enzymes [BR:
mym01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A176_002996
Messenger RNA biogenesis [BR:
mym03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A176_002996
Ribosome biogenesis [BR:
mym03009
]
Prokaryotic type
rRNA helicases
A176_002996
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WSD
CMS1
Motif
Other DBs
NCBI-ProteinID:
AKQ66084
UniProt:
A0A0H4WTG7
LinkDB
All DBs
Position
complement(3722022..3723737)
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AA seq
571 aa
AA seq
DB search
MKAPPTPAPSDATFESLGLKPALVEALSALGYEEPTPIQAAALPPLLGGKDLLGIAATGT
GKTAAFALPLLNHVTPGACKPHTTSALVLVPTRELAMQVSEAIHRYGQKLGVSVLPLYGG
QVIGQQLRVLKRGVDVVVATPGRALDHLRRGTLQLDDVRMVVLDEADEMLDMGFADDLEA
ILSGTPEDRQTALFSATLPPRIASIAERHLHEPVRVKIAREKVEQGEMPRVRQTAYVVPR
AFKIATLGRLLDVESPTAAIIFCRTRTEVDDLTVSLNGRGWRAHALHGGMTQEQRDRVIK
QLKSQGTDLLVATDVAARGLDIPRLSHVVNFDVPNAPEAYVHRIGRTGRAGREGVAITLV
EPREHRLLRNIERVTGQRIEVATVPTVADMREKRQELLRESLRETLVAGEFDSLRSVVEG
LASEFDPMDIAAAAVKLLHDAQDEGRDAEETEIPVVAPPQERKDRPGGKFGGPSGRSGPS
ERGPKSRGAPPTWDVTRLWIGAGRHAGMRPADLVGAIAGEAGVESSKIGAIQIGDTFSLV
EVPESDANRIIAALKNATLRGKKVLVRKDRN
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagcccccccgacccccgccccgtccgacgccacgttcgaatccctgggcctcaag
cccgcgctcgtcgaggccctcagtgcgcttggctacgaggagcccacccccatccaggcc
gcggccctcccgccgctcctgggcgggaaggacctgctcggcatcgccgccaccggcacc
ggcaagacggccgccttcgcgctgcccctgctcaaccatgtcacgccaggtgcgtgtaag
ccccacaccacgtccgccctggtcctggtccccacccgcgagctggccatgcaggtgtcc
gaggccatccaccgctacggccagaagctcggcgtctccgtgctgcccctgtacggcggg
caggtcatcggccagcagctccgcgtcctgaagcgcggcgtggatgtcgtggtcgcgacg
ccgggccgtgcgctggaccacctgcgccggggcacgctccagctcgacgacgtgcggatg
gtggtgctcgacgaggccgacgagatgctcgacatgggcttcgccgacgacctggaggcc
atcctctccggcacgcccgaggaccggcagacggccctcttctcggccaccctgcccccg
cgcatcgccagcatcgccgagcgccacctgcacgagcccgtgcgcgtgaagatcgcccgc
gagaaggtggaacagggcgagatgccccgcgtccgccagacggcctacgtcgtcccgcgc
gcgttcaagatcgccacgctgggccgcctgctcgacgtggagtcccccaccgccgccatc
atcttctgccgcacgcgcacggaggtggatgacctcacggtgtcgctgaatggccgcggc
tggcgcgcccacgccctgcacggcggcatgacgcaggagcagcgcgaccgcgtcatcaag
cagctcaagtcccagggcaccgacctgctggtggccaccgacgtcgccgcgcgcggcctg
gacatcccccgcctgtcgcacgtggtgaacttcgacgtgcccaacgcgcccgaagcctac
gtgcaccgcatcggccgcacgggtcgcgccggccgtgagggcgtggccatcaccctggtg
gagccgcgcgagcaccggctgctgcgcaacatcgagcgcgtcacgggccagcgcatcgaa
gtggccaccgtccccaccgtcgcggacatgcgcgagaagcgacaggagctgctccgcgag
tccctgcgcgagacgctggtggccggtgagttcgactctctccgcagcgtggtggaggga
ctggccagcgagttcgaccccatggacatcgccgccgccgcggtgaagctcctccatgac
gcccaggacgagggccgtgacgccgaggagacggagattcccgtcgtcgcgccgccgcag
gagcggaaggaccgtccgggcggcaagttcggtggtccgtcggggcggtcaggaccgtcg
gagcggggcccgaagtcccgtggggcgcccccgacgtgggatgtcacccggctgtggatt
ggagcgggccgtcacgcgggcatgcgccccgccgacctcgtgggtgccatcgcgggcgag
gcgggcgtcgagtcctcgaagattggcgccatccagattggcgacaccttctcgttggtg
gaggtccccgagtccgacgccaaccgcatcatcgccgcgctgaagaacgccacgctgcgg
ggcaagaaggtgctggtccggaaggaccgaaactga
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