Pseudomyxococcus hansupus: A176_005956
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Entry
A176_005956 CDS
T04077
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mym
Pseudomyxococcus hansupus
Pathway
mym03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mym00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A176_005956
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mym03400
]
A176_005956
Enzymes [BR:
mym01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A176_005956
DNA repair and recombination proteins [BR:
mym03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A176_005956
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AKQ69044
UniProt:
A0A0H4X1M8
LinkDB
All DBs
Position
7381712..7385149
Genome browser
AA seq
1145 aa
AA seq
DB search
MLARLHAALKAPLVCVAVDEEAADALAADLSFFLGGHGSLLEPRVLRLPADEALPFDEVS
PDAAVVTERLGALFHVGQGTRFPALVLSVRALYRRVLPLEMMRALSARVSAGQDFDRDSL
ARRLVRMGYQNSPLVEDVGTFSVRGDLLDVFSPLYDKPVRLEFFGDTIESIRAFDPQSQR
TVDALKDVHLVPAREVLLTDETRPRAEAAARAVADRINLPTIKLREQLETLREGLPGFGM
EGLLPGFFEGGLSTVFDFLRDWGPDAPVFYVDDPLGQDRAVETLWEELERSHAAAEARQE
LTCPPLEHFLAREDVDQRLRGFRVLEGGGLSLAQTERPPVHFTFGGTQDLREAILAHHGE
EGALSPLVERLERWRELRTACVVACGTLSQADRLKRLLMDRNVVVKVHTEPLVDASSLYE
PSIRAHLFTGEVSHGFVDGPGGLAVLADEEIFGVRARRRPRRSKKLDAFGSGFGDLKEGD
LIVHTDFGIGRYAGLTKMEVNGVPGDFLVLEYAGRDKIYLPVGRMRLIQKFSGGDPTQVQ
LDKLGTTSWEKTKKRVKEQLLKMAAELLQIAAARKAHPGHAFSAPDRYYAQFEADFEFEE
TPDQAKAIEDVLADMQKAEPMDRLVCGDVGYGKTEVAMRAAFKAALDRKQVAVLVPTTVL
AQQHFLSFKKRFKDYPVTVEVISGLKKAPEVREILKRAKEGKVDILIGTHKLLGGEVAFK
DLGLMIVDEEQRFGVKQKESLKKWRSQIDVLTLTATPIPRTLHMSMSGVRDMSIIATPPQ
DRRAIRTFVMKYEDQVVKEAIEREVARGGQVFFVHNRVESLPSIETQIRTLVPQVTLGVA
HGQMGEGQLEKVMLAFTEKKYQVLLCTSIIESGIDISSANTMIVNRADQFGLAQLYQLRG
RVGRSKERAYAYLLVPSRRAVTKDAQRRLEVLQNFTELGAGFSIASHDLEIRGAGNLLGD
KQSGAIAEIGFDMYAQLLEEAVAEMQGQPPKMQIEPDVTLPMPALIPDDYVSDVHQRLVF
YKRFSQASHPDEVTDLRAELVDRYGEAPDEVDHLSELTLLKIDMRDLRLRGLEVGTTRLV
VTLGADALLDGPKVAGLVQRSKGLYRLTPDMKLVARAPQGASGHDLIAEAKKVLRDLGHC
ALPQA
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgcccgcctccatgccgcgctgaaggcgcccctggtctgcgtcgccgtggacgag
gaggccgcggacgcgctcgccgccgacctgtccttcttcctgggaggccacggcagcctg
ctggagccccgggtgctgcggctgcccgccgacgaggcgctccccttcgacgaggtgtcc
cccgacgcggccgtggtgacggagcggctgggcgccctcttccacgtgggccagggcacg
cgctttcccgcgctggtgctgtccgtgcgcgcgctgtaccgccgtgtgctgccgctggag
atgatgcgcgcgctgtccgcgcgggtgtccgcgggccaggacttcgaccgcgactcgctg
gcgcgccggctggtgcgcatgggctatcagaacagcccgctggtggaggacgtgggtacc
ttcagcgtgcgcggcgacttgctggacgtcttcagcccgctctacgacaagcccgtccgc
ctggagttcttcggcgacaccatcgagtccatccgcgccttcgacccgcagtcccagcgc
acggtggacgcgctcaaggacgtgcacctggtgcccgcgcgcgaggtgctcctcaccgat
gagacgcgcccgcgcgccgaggccgccgcccgcgcggtggccgaccgcatcaacctgccc
accatcaagctgcgcgagcaactggagacgctgcgcgagggcctgcctggcttcgggatg
gagggcctgctgcccggcttcttcgagggcgggctgtccacggtgttcgacttcctgcgc
gactggggccccgacgcgcccgtcttctacgtggatgacccgctggggcaggaccgcgcg
gtggagacgctgtgggaggagctggagcgctcccacgcggcggccgaggcgcgacaggag
ctcacctgtcccccgctggagcacttccttgcccgcgaggacgtggaccagcggctgcgc
ggcttccgcgtcctggagggcggcggcctgtcgctggcgcagacggagcgcccgccggtg
cacttcaccttcggcggcacccaggacctgcgagaagccatcctcgcgcaccacggcgaa
gagggcgcgctgtccccgctggtggagcggctggagcgctggcgggagctccgcacggcc
tgcgtggtggcgtgcggcacgctgagccaggcggaccggctgaagcggctgctgatggac
cgcaacgtggtggtgaaggtgcacacggagccgttggtggacgcctcgtcgctgtacgag
ccgtccatccgggcgcacctcttcacgggcgaggtgagccacggcttcgtggacgggccg
ggtgggctcgcggtgctggcggatgaggaaatcttcggcgtgcgcgcgcgccggcggccc
cggcgcagcaagaagctggacgcgttcggctcgggcttcggggacctgaaggaaggcgac
ctcatcgtccacaccgacttcggcatcggccgctacgcgggcctgacgaagatggaggtc
aacggcgtgcccggggacttcctcgtcctggagtacgcgggccgggacaaaatctacctg
ccggtgggccgcatgcggctcatccagaagttctccggtggcgaccccacgcaggtgcag
ctcgacaagctgggcaccacgagctgggagaaaacgaagaagcgcgtcaaggagcagctc
ctcaagatggcggcggagctgctgcaaatcgccgccgcgcgcaaggcgcacccgggccac
gccttcagcgcgccggaccggtactacgcccagttcgaagcggacttcgagttcgaggag
acgccggaccaggccaaggcgattgaagacgtcctggcggacatgcagaaggccgagccc
atggaccggctcgtctgcggcgacgtgggctacggcaagacggaggtggccatgcgcgcc
gccttcaaggccgcgttggaccgcaagcaggtggcggtgctggtgcccaccacggtgctg
gcgcagcagcacttcctctccttcaagaagcgtttcaaggactaccccgtcacggtggag
gtcatctccgggctgaagaaggcgccggaggtgcgtgaaatcctcaagcgcgccaaggag
ggcaaggtcgacatcctcatcggcacccacaagctgctgggcggcgaggtggccttcaag
gacctgggtctgatgattgtcgacgaggagcagcgcttcggcgtgaagcagaaggagtcg
ctcaagaagtggcgctcccagattgacgtgctcacgctgacggccacgcccattccccgc
acgctccacatgagcatgtccggcgtgcgggacatgagcatcatcgccacgccgccgcag
gaccgccgggccatccggaccttcgtgatgaagtacgaggaccaggtcgtcaaggaggcc
atcgagcgcgaggtggcgcgcggcggacaggtgttcttcgtccacaaccgcgtggagtcg
ctgccgtccatcgagacgcagattcgcacgctggtgccccaggtcacccttggcgtggcg
cacgggcagatgggcgaggggcagctcgagaaggtgatgctcgccttcacggagaagaag
tatcaggtgctgctgtgcaccagcatcatcgagagtggcatcgacatctccagcgccaac
acgatgattgtgaaccgggcggaccagttcggactggcgcagctctaccagctccgaggc
cgcgtgggacgctccaaggagcgcgcctatgcgtacctgctggtgccgtcacggcgggcg
gtgacgaaggacgcgcagcggcgcttggaagtgctccagaacttcaccgagctgggcgcg
ggcttctccatcgccagtcatgacctggagattcgtggcgcaggcaatctgctgggcgac
aagcagtcgggtgccatcgcggagattggcttcgacatgtacgcgcagcttctggaagag
gccgtcgcggagatgcagggccagccgcccaagatgcagattgagccggacgtcacgctg
cccatgccggcgctcatcccggacgactacgtcagcgacgtccaccagcggctcgtcttc
tacaagcgattcagccaggccagccacccggacgaggtgacggacctgcgcgcggagctg
gtggaccgctacggcgaagccccggacgaggtggaccacctgtccgagctgacgctgctg
aaaatcgacatgcgcgatttgcggctgcgcgggctggaggtgggcaccacccgcctggtg
gtgacgctgggcgcggacgcgctgctggacggccccaaggtggcggggctggtgcagcgc
tccaagggcctctaccgcctcacgccggacatgaagctcgtcgcccgggcgccgcagggt
gccagcggccacgacctcatcgccgaggccaagaaggtgctgagggatttgggccactgc
gcgctgccgcaggcgtag
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