Pseudomyxococcus hansupus: A176_006953
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Entry
A176_006953 CDS
T04077
Name
(GenBank) Protein RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mym
Pseudomyxococcus hansupus
Brite
KEGG Orthology (KO) [BR:
mym00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mym03016
]
A176_006953
Enzymes [BR:
mym01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
A176_006953
Transfer RNA biogenesis [BR:
mym03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
A176_006953
Prokaryotic type
tRNA splicing ligases
A176_006953
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AKQ70041
UniProt:
A0A0H4X330
LinkDB
All DBs
Position
8562263..8563615
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AA seq
450 aa
AA seq
DB search
MSWKQRLEKVSEGHYTLPKTKSMKVDADLFLSDKLLWGEGPEQPGLEDSVFDQVVNAASF
PGVTRVAVTPDCHLGYGVPIGTVVETDGILLPTAAGYDIGCGMVQLQTTLMAEDVADPAK
RRRWIDEVTKRIAVGVGASRVQRQRRVTDRTFGDVVRHGAKALGRGNAVTERDYIPVEDD
RVDIPERAFGKREQLGSLGGGNHFTEMQVDQDGRVWVMLHTGSRGFGWNIAKHFFVEGAA
QLGLKSRSEDHVWLDAESPLGRDYWNLHNMAANFAVANRLIIGEAVCDALEAVFGGTAHV
YYEISHNLIQKEAGRFVARKGATRAFPGGHPALKGTPWEKSGHPILIPGSMETGSAILFA
EPGAEKSIYSVNHGSGRRMSRGEARRVLKQDATDQRMAEAGILLNTRQTPLDESGPCYKN
LDDVLETVEMAGLARVAHRLKPVACIKGAD
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgagctggaagcagcggctggagaaggtctcggaagggcactacaccctgccgaagacc
aagagcatgaaggtcgatgcggacctgttcctgtccgacaagttgctgtggggggagggc
cccgagcaacccggcctggaggactccgtctttgaccaggtggtgaatgccgcctccttc
cccggggtcacccgcgtcgccgtcacgccggactgtcatctgggctacggagttcccatt
ggcacggtggtggaaacggacggcatcctcctgcccaccgccgccgggtacgacatcggc
tgcggcatggtgcagctccagacgacgctcatggccgaggacgtcgccgaccccgccaag
cgccgccgctggattgacgaggtgacgaagcgcatcgccgtgggcgtgggcgccagccgc
gtgcagcgccagcggcgcgtgacggaccgcaccttcggcgacgtggtgcgccatggcgcc
aaggccctgggccggggcaacgccgtcaccgagcgcgactacatccccgtcgaggacgac
cgggtggacatccccgagcgcgccttcggcaagcgcgagcagttgggcagcctgggcggc
ggcaaccacttcaccgagatgcaggtcgaccaggacggccgcgtgtgggtgatgctgcac
accggcagccggggcttcggatggaacatcgccaagcacttcttcgtggagggcgccgcg
cagctcggcctcaagagccgcagcgaggaccatgtctggctggacgcggagagcccgctg
ggccgcgactattggaacctgcacaacatggcggccaacttcgcggtggccaaccggctc
atcattggtgaggcggtgtgcgacgcgctcgaggctgtctttggcggcacggcccacgtc
tattacgaaatctcccacaacctcatccagaaggaggcgggcaggttcgtcgcgcgcaag
ggcgccacgcgggcgttccccggtggacaccccgcgctcaagggcacgccgtgggagaag
tcgggccaccccatcctcatcccgggctccatggagacgggcagcgccatcctcttcgcg
gagccgggggccgagaagtccatctactcggtgaatcatggctccggccggcgcatgtct
cgcggcgaggcgcggcgcgtgctgaagcaggacgccaccgaccagcgcatggccgaggcc
ggcatcctcctcaacacccgccagacgccgctggatgaatccgggccttgctacaagaac
ctggacgacgtcctggagacggtggagatggccgggctcgcccgggtggcccaccgcctc
aagccggtggcctgcatcaagggcgcggactga
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