Pseudomyxococcus hansupus: A176_006993
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Entry
A176_006993 CDS
T04077
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mym
Pseudomyxococcus hansupus
Pathway
mym03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mym00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A176_006993
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mym03019
]
A176_006993
03016 Transfer RNA biogenesis [BR:
mym03016
]
A176_006993
Enzymes [BR:
mym01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
A176_006993
Messenger RNA biogenesis [BR:
mym03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A176_006993
Transfer RNA biogenesis [BR:
mym03016
]
Prokaryotic type
tRNA degradation factors
A176_006993
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
Motif
Other DBs
NCBI-ProteinID:
AKQ70081
UniProt:
A0A0H4X364
LinkDB
All DBs
Position
complement(8603333..8605228)
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AA seq
631 aa
AA seq
DB search
MDTSVSPRTVTGRLDVHPRGFGFLTVQTPGSAEVLSAFVPPPDLNPYFAGDIVTATVTAA
ADGRWSASQLSLVERTRARVYGEVVLRKGAPLLRVDREVANADWALEVGGTPVQAGDAVV
ARIDEGKVVLLYRVEAGEDRSLERVIARHGLRKDFVSEVVDEARGARAVPHARGARRDLR
DVPTVTVDAPSTRDIDDAISVLPAGPDGALRLLVSIADVGEYVKQGTALDDEARERATSV
YLAGRVLPMLPEELSSHWLSLVQGEERLCLTVELRIDPQGRVTAADVYESIIRSWARLNY
DEVAAFLDRGEVSEPMAPVRDVMPWFRLAAARLAVARAARGGMEFARDEARFTFDQATGE
LSGLVSEKPTSAHTMIERFMVAANESIAGWLLARGLPGVYRVHEQPDPLRVADLNAFAET
SGFAAGFGRELTPLALAAFDRQIAGAVAEPALRSVLRRSLGPSRYTVKPGPHFGLAAPLY
LHFTSPIRRYADLAVHRTLKGYLRGRRDFVDQDPEVETLAVHINAKARAANRAENDRHRE
LEARWMAGHVGKQFPARVTRVRPFGLVVQLDGMLVEGVVPADALPGGPFRPDARELSLVG
KERTFTVGMPVTVKVASTDEQLGRIELSLAG
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggatacttccgtttcgccccgcaccgtcaccggccgtctcgacgtccacccccgaggc
ttcggcttcctcaccgtccagacgcccggctcggccgaggtgctgtccgccttcgttccg
ccgcctgacctcaacccctacttcgccggggacatcgtcacggccacggtgacggcggcc
gcggatggccgctggtcggccagccagttgtcgctggtggagcgcacccgcgcccgcgtc
tacggcgaggtggtgctgcgcaagggcgccccgttgctccgcgtggaccgtgaggtggcc
aacgcggactgggcgctggaggtgggcgggacgccggtgcaggccggtgacgcggtggtg
gcgcgcatcgacgagggcaaggtggtgttgctctaccgcgtggaagcgggggaggaccgc
tcgttggagcgggtcatcgcgcgtcacgggctgcgcaaggacttcgtctcggaggtcgtc
gacgaggcccgaggcgcgcgagcggtgccccacgcccggggtgcccggcgggacttgcgg
gacgtgcccacggtgacggtggatgcgccgtccacgcgagacatcgacgacgcgatctcc
gtgctgcccgcggggccggacggggcgctgcggctgttggtgtccatcgcggacgtgggc
gagtacgtgaagcagggcacggcgctggacgatgaggcgcgcgagcgggccaccagcgtg
tacctggcggggcgcgtgctgccgatgctgcccgaggagctgtcctcgcactggctgagc
ctggtgcagggcgaggagcggctgtgcctgacggtggagctgcgcatcgacccgcagggg
cgggtgacggcggcggatgtgtacgagagcatcatccgctcgtgggcgcggctgaactac
gacgaggtggcggccttcctggaccggggcgaggtgtcggagcccatggcgccggtgcgg
gacgtgatgccgtggttccggttggccgcggcgcggttggcggtggccagggctgcgcgt
ggcggcatggagttcgcgcgggacgaggcgcgcttcaccttcgaccaggcgacgggcgaa
ctgtccgggctggtgagtgagaagccaacgtccgcgcacacgatgattgagcgcttcatg
gtggcggcgaacgagtccatcgcgggatggctgctcgcgcgcggcctccctggggtgtac
cgcgtgcacgagcagccggacccgctgcgggtggcggacctgaatgcgttcgcggagacg
tcgggcttcgcggcgggcttcgggcgggagctgacgccgctcgcgctggcggcgttcgac
cggcagatcgcgggcgcggtggcggagccggcgctgcgttcggtgttgcggcgctcgctg
gggccgtcgcgttacacggtgaagccggggccgcacttcgggttggcggcgccgttgtat
ctgcacttcacgtcaccgattcgccggtacgcggacctggcggtgcaccggacattgaag
gggtatctgcgcgggcggcgggacttcgtggaccaggacccggaggtggagacgctggcg
gtgcacatcaacgcgaaggcgcgcgcggcgaaccgggcggagaacgacaggcaccgtgag
ctggaggcgcggtggatggcggggcacgtgggcaagcagttccccgcgcgggtgacgcgg
gtgcggcccttcgggctggtggtgcagttggacggcatgttggtggaaggcgtggtgccc
gcggatgcgctgcctggaggccccttccgtcccgacgcgcgcgagctgtcgctggtgggc
aaggagcggaccttcaccgtgggcatgccagtgacggtgaaggtggcgtccaccgacgag
caactcggccgcatcgagctgtcgctggccggatga
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