Mycolicibacterium neoaurum NRRL B-3805: MyAD_06325
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Entry
MyAD_06325 CDS
T05013
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
myn
Mycolicibacterium neoaurum NRRL B-3805
Pathway
myn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
myn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MyAD_06325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
myn03021
]
MyAD_06325
03400 DNA repair and recombination proteins [BR:
myn03400
]
MyAD_06325
Enzymes [BR:
myn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MyAD_06325
Transcription machinery [BR:
myn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MyAD_06325
DNA repair and recombination proteins [BR:
myn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MyAD_06325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AMO04860
LinkDB
All DBs
Position
1340979..1344932
Genome browser
AA seq
1317 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVIVAVDTEMRHNELSTLEAEMVVEKKAVEDQRDADLEARAQKLEAD
LAELEKEGAKSDVRRKVRDGGEREMRQLRDRAQRELDRLDEIWTTFTKLAVKQLIVDEVL
YRELVDRYGEYFTGAMGAESIKKLIETFDIDAEAESLRDTIKNGKGQKKLRALKRLKVVA
AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFFLTTEIDGDKGEYT
PAATDTPETGVYSSPAEAIMAMDRGALSVRAKIKVRLTTLRPPADIEAQLFPEGWKHGDA
WTASTTLGRVLFNELLPKGYPFVNAQMFKKAQASIINDLAERYPMIVVAQTVDKLKDAGF
HWATRSGVTVSMADVLVPPQKTEILERYEGEADAIEKQYQRGKLNHDERNGELVKIWQQA
TEEVGKALEEYYPSDNPIITIVKSGATGNITQTRTLAGMKGLVTNPKGEYIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCQTERGINVTL
AEKAEDGTLVRDQHIETSAYARTLATDAVDADGNVVIERGHDLGDPAIDALLAAGITEVK
VRSVLTCTTGTGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVT
GGADIVGGLPRVQELFEARVPRNKAPIADVTGRVQLEETDKFYKITIVPDDGGEEVVYDK
LTRRQRLKVFKHDDGSERLLSDGDHVEVGQQLMEGAADPHEVLRVQGPREVQIHLVREVQ
EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERSEFESENRRVVAEGNE
PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLMGLKENVIIGKLIP
AGTGIARYRDIQVNPTEEARAAAYTIPSYEDQYYSPDFGQSTGAAVPLDDYGYSDYR
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacttcttcgatgaactccgcatcggtctggcgaccgcggacgacatc
cgcaactggtccttcggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cccgagaaggacggcctgttctgcgagaagatcttcggacctactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgtcgtgagcggatgggccacatcgagctggccgcaccc
gtcacgcacatctggtacttcaagggcgtcccgtcgcgcttgggctacctgctggacctg
gccccgaaggatctggaaaagatcatctacttcgcggcctacgtcatcgtcgccgtcgac
accgagatgcggcacaacgagctctcgacgctcgaggccgagatggtcgtcgagaagaag
gccgtcgaggatcagcgcgacgccgacctggaggcccgggcccagaagctcgaagccgac
ctggccgagctggagaaggaaggcgccaagtccgacgtgcgccgcaaggtgcgcgacggt
ggcgagcgcgagatgcgccagctgcgcgatcgggcccagcgtgagctggaccggctcgac
gagatctggaccaccttcaccaagctggccgtcaagcagctcatcgtcgacgaggtgctc
taccgcgagctcgtcgaccgctacggcgagtacttcaccggtgcgatgggtgccgagtcg
atcaagaagctcatcgagaccttcgacatcgacgccgaggccgagagcctgcgcgacacc
atcaagaacggcaagggccagaagaagctgcgtgcgctcaagcgactgaaggtcgtcgcc
gcgttccagcagtccggcaactcgcccatgggcatggtgctcgacgccgttccggtgatc
ccgccggagctgcgcccgatggttcagctcgacggtggccgcttcgcgacctccgacctc
aacgatctgtaccgccgagtcatcaaccgcaacaaccggctcaagcgactgatcgacctc
ggtgcgcccgagatcatcgtcaacaacgagaagcgcatgcttcaggagtcggtggacgcg
ctgttcgacaacggccgtcgtggccggcccgtcaccgggccgggcaaccgtccgctcaag
tcgctgtccgatctgctcaagggcaagcagggccgcttccgtcagaacctgctcggtaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggtctgcccaagctgatggccctcgagctgttcaagccgttcgtgatgaagcgtctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcgcatggtggaacgccagcgt
ccccaggtgtgggatgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcacctaccctgcaccgcctcggtatccaggccttcgagccgcagctggtcgagggcaag
gccatccagctgcacccgctggtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcaccttccgctgtcggcggaggcgcaggccgaggcacgcatcctgatgctg
tcctcgaacaacatcctgtcgcccgcgtcgggtcgtccgctggccatgccgcgtctggac
atggtgaccggtctgttcttcctgaccaccgagatcgacggtgacaagggcgaatacacc
ccggccgccacggacaccccggagaccggtgtgtacagctcgccggccgaggcgatcatg
gcgatggaccgcggcgcgctgagcgtgcgcgccaagatcaaggtgcggctgaccaccctg
cgtccgccggccgacatcgaggcacagctgttccccgagggctggaagcacggggatgcc
tggaccgcgtcgaccacgctgggtcgggtgctgttcaacgagctgctgcccaagggctac
ccgttcgtgaacgcgcagatgttcaagaaggcgcaggcgtcgatcatcaacgatctcgcc
gagcgctacccgatgatcgtcgtcgcgcagaccgtcgacaagctcaaggacgcgggcttc
cactgggcgacccgctcgggcgtgacggtctccatggccgacgtgctcgtgccgccgcag
aagaccgagatcctggagcgctacgagggcgaagccgacgcgatcgagaagcagtaccag
cgcggcaagctcaaccatgacgagcgcaacggcgagctggtgaagatctggcagcaggcc
accgaagaggtcggtaaggcgctggaggagtactacccgtcggacaacccgatcatcacg
atcgtgaagtccggcgccacgggcaacatcacccagacccgcacgctcgcgggcatgaag
ggtctggtgaccaacccgaagggtgagtacatcccgcgtccgatcaagtcctcgttccgc
gagggcctgaccgtgctggagtacttcatcaacacccacggtgcccgtaagggtctggcc
gacaccgcgctgcgtaccgccgactcgggttacctgacccgtcgtctggtggacgtgagc
caggacgtcatcgtgcgcgagaccgattgccagaccgagcgcggcatcaacgtcacgctg
gccgagaaggcagaggacggcacgctggtccgcgatcagcacatcgagacgtcggcgtac
gcccggacgctggccaccgacgcggtggacgctgacggcaacgtcgtcatcgagcgcgga
catgacctgggcgacccggccatcgacgcgctgctggccgccggcatcaccgaggtgaag
gtccgctccgtgctgacctgcaccacgggcaccggcgtctgcgccatgtgctatggccgc
tcgatggccaccggcaagctcgtcgacatcggcgaggccgtcggtattgtcgccgcgcag
tcgatcggtgagcccggcacgcagctgaccatgcgtaccttccaccagggtggtgtcacc
ggtggcgccgacatcgtcggtggtctgccgcgtgtgcaggagctgttcgaggcccgcgtt
ccgcggaacaaggccccgatcgccgatgtcaccggccgggtgcagctggaggagaccgac
aagttctacaagatcaccatcgttcccgacgatggtggcgaggaagtcgtctacgacaag
ctgacccgtcgccagcgcctgaaggtgttcaagcacgacgacggttccgagcgcctgctc
tccgacggtgaccacgtcgaggtcggccagcagctcatggaaggtgctgccgatccgcac
gaggtgctgcgtgtgcagggcccgcgcgaggtgcagatccacctggtccgcgaggtccag
gaggtctaccgcgcccagggtgtgtcgatccacgacaagcacatcgaggtcatcgtgcgg
cagatgctgcgtcgcgtgacgatcatcgattccggtgccacggagttcctgcccggatcg
ctgaccgagcgcagcgaattcgagtcggagaaccgtcgggtcgtcgccgagggcaacgag
cccgcggcgggacgtccggtgctgatgggtatcacgaaggcatcgctggccaccgattcg
tggctgtcggcggcgtcgttccaggagaccactcgcgtgctgaccgatgcggcgatcaac
tgccgcagcgacaagctgatgggtctgaaggagaacgtgatcatcggtaagttgatcccg
gccggtaccggcatcgcccgttaccgcgacatccaggtcaacccgaccgaggaggcccgc
gctgcggcgtacacgatcccgtcctacgaggatcagtactacagcccggacttcggccag
agcaccggcgctgccgtgccgctggacgattacggttactcggactaccggtag
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