Mycolicibacterium neoaurum NRRL B-3805: MyAD_21660
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Entry
MyAD_21660 CDS
T05013
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
myn
Mycolicibacterium neoaurum NRRL B-3805
Pathway
myn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
myn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MyAD_21660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
myn03400
]
MyAD_21660
Enzymes [BR:
myn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MyAD_21660
DNA repair and recombination proteins [BR:
myn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MyAD_21660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
Cas3-like_C_2
ResIII
AAA_22
MFD_D3
DUF7692
YmdB
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AMO07340
LinkDB
All DBs
Position
complement(4645943..4649578)
Genome browser
AA seq
1211 aa
AA seq
DB search
MTAPGHTHVQIPIAGLVDLALTSPTFLDLIDRAQGRPDTLAMVGPASARLFTAAALARTG
PLLVVTATGREADDLTAELKAVFGDAVALFPSWETLPHERLSPGVETVGARMLVLRRLAR
PDDEHLGPPLQVVVTTARSLLQPMLAGLGEIEPVTLAVGADSDFDETIARLVELAYTRVD
MVAKRGEFAVRGGILDIFPPTAEHPVRVEFWGDEVSEMRMFSVADQRSITEIEIHRVDAV
ACREILITEQVKQRAAQLVDAQPQTDNTIAGSIGDMLAKLSEGIPVDGMEALLPVLEPTE
LTLLTSHLPEGTPVLVCDPEKVRSRSADLIRTGREFLEASWSVAAIGGAAPVDVEALGGS
GFRELDEVRAGAAHWWTLSQLNDESAVELDVRPAPSARSQHVVEEIFAMLRAHVATGGYG
VVVTPGTGTAHRVVEQLAEADTPATLLEAGAQPAAGVVGVLKGPLHDGVVIPGANLVIIT
ETDLTGNRVAATDGKRLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTERVIGGARRE
YLVLEYASAKRGGGTDKLYVPMDSLDQLSRYVGGQAPTLSRLGGSDWTNTKTKARKAVRE
IAGELVSLYAKRQAAPGHAFGPDTPWQAEMEDAFGFTETMDQMTAIAEVKSDMEKPVPMD
RVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTARMAGFPVTVKGL
SRFTDPTESKAVLDGMVDGSVDVVIGTHRLLQTAVRWKDLGLVIVDEEQRFGVEHKEHIK
SLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERFPVLTYVGPHDDKQVAAALR
RELLRDGQAFYIHNRVKSIDQAAARVQAMVPEARVVVAHGQMAEETLEKTVEGFWNREFD
ILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPEVPLT
ETAHDRLATIAQNNDLGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRLVGEAV
EAYRAAVDGKTVVSQEEQKDVRIDLPVDAHLPPDYIGSDRLRLEAYRRLAAASDNAAVAR
VIDELVDRYGPLPEPAQRLVAVARLRLLCREYGVTEVSTVSDSTLKVSPLTLQDSGQLRL
KRIYPGSAYRATTSTVQIPIPRAGSGVGAPRIRDLDLLQAVAGMLLALDGRPADEVDITG
GTATSEPGADR
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggcacactcatgtccaaatcccgatcgcggggctcgtcgacctggcg
ctcacctcgcccaccttcctcgatctgatcgaccgcgcccaaggccggccggacacactg
gcgatggtcggtccggccagcgcgcggctgttcaccgcggccgcgctggctcgtaccggc
ccgctgctcgtcgtcaccgcgacgggccgcgaggccgatgacctgaccgccgaactcaag
gccgtgttcggggacgccgtcgcgctgttcccgtcctgggagacgctgccgcacgagcgg
ctctcacccggggtcgagacggtcggcgccaggatgctggtgctgcgccggctcgcgcgc
cccgacgacgagcacctcggtccgccgttgcaggtggtggtcaccacggctcggtcgctg
ctgcagccgatgctggccggcctcggtgagatcgagccggtgacattggctgtcggcgcc
gattcggatttcgacgagacgatcgcgcggctggtcgagctggcctacacccgggtggac
atggtggccaagcgcggtgagttcgcggtccgcggcggcatcctggacatcttcccgccg
accgccgaacatccggtgcgcgtggagttctggggcgacgaggtgtccgagatgcggatg
ttctcggtcgccgaccagcgctccatcaccgagatcgagatccaccgcgtcgatgccgtg
gcctgccgcgagatcctgatcaccgaacaggtcaagcaacgcgccgcccagctcgtcgac
gcccagccccagaccgacaacaccatcgccggatccatcggcgacatgctggccaagctt
tccgagggtatcccggtcgacgggatggaggcgctgctgccggtgctggagcccaccgag
ctgacgctgctgaccagccatctgcccgagggcaccccggtgctggtgtgcgatcccgag
aaggtgcgctcgcgctccgcggacctgatccgtaccggccgcgaattcctggaggcgtcc
tggtcggtggcggccatcggtggcgccgccccggtggacgtcgaagcgctcggcgggtcg
ggcttccgcgagctcgacgaggtgcgtgccggtgcggcgcactggtggacgctgagccag
ctcaacgacgagtcggcggtcgaactcgacgtgcgaccggcgccatctgcacgaagccag
catgtcgtcgaggagatcttcgcgatgctgcgcgcccacgtcgccacgggcggttacggc
gtcgtggtcacaccgggcaccggcaccgcgcaccgcgtcgtcgagcagctcgccgaagcc
gacacgcccgcaacgttgttggaggccggcgcgcagccggcagccggtgtggtcggggtg
ctcaagggcccgctgcacgacggtgtcgtcatccccggcgccaacctggtgatcatcacc
gaaaccgatctgaccggtaaccgcgtcgccgccaccgacggcaaacgccttgccgccaag
cgccgtaacgtcgtcgacccgttggcgctgacggccggtgacctggtggtccacgatcag
cacggcatcggcaagttcgtcgagatgaccgaacgcgtcatcggcggcgcacggcgcgag
tacctggtgctcgaatacgcatcggccaagcgcggcggcggcaccgacaagctctacgtc
ccgatggactcactggatcagctgtcgcgctacgtcggcgggcaggccccgacgctgagc
cggctcggcggcagcgactggaccaacaccaagaccaaggcgcgcaaggccgtccgtgag
atcgccggtgagttggtgtcgctgtacgccaagcggcaggccgcaccgggtcacgccttc
ggcccggacaccccgtggcaggccgagatggaggatgcgttcgggttcaccgagaccatg
gaccagatgaccgccatcgccgaggtcaaatccgatatggagaaaccggttccgatggac
cgggtcatctgcggtgacgtcggctacggcaagaccgagatcgcggtgcgcgcggcgttc
aaggcggtgcaggacggtaagcaggtcgcggtcctggtgcccacgacgctgctcgccgac
cagcatctgcagaccttcaccgcgcggatggccggtttcccggtgaccgtcaagggactg
tcgcggttcaccgacccgaccgaatccaaggcagtgctggacggaatggtcgacggctcg
gtcgatgtcgtgatcggcacgcaccggctgctgcagaccgcggtgcgctggaaggacctc
ggcctggtcatcgtcgacgaggagcagcgtttcggcgtcgagcacaaggaacacatcaag
agcctgcgcacccacgtcgacgtgctgaccatgagcgcgacgccgatcccgcgcaccctg
gagatgagcctggccggtatccgcgagatgtcgaccatcctcaccccgcccgaggagcgc
ttcccggtgctgacctacgtcggcccgcacgatgacaagcaggtcgccgccgcactgcgt
cgcgaactgctgcgcgacgggcaggccttctacatccacaaccgggtcaagtcgatcgac
caagcggccgcccgggtgcaggcgatggtgcccgaggcccgggtcgtggtggcgcacggt
cagatggccgaggagaccctggagaagaccgtcgaggggttctggaatcgcgagttcgac
atcctggtgtgcaccaccatcgtcgagacgggtttggacatctccaacgccaacaccctg
atcgtggaacgggcggacaccttcgggctttcccagctgcaccagctgcgcggcagggtg
gggcgcagccgggaacgcgggtacgcctacttcctctatccgcccgaggtgccgctcacc
gagaccgcccacgaccggttggcgaccatcgcccagaacaacgatctgggtgccgggatg
gcggtggccatgaaggatctggagatccgcggagcgggcaacgtgctgggcgtcgaacag
tccgggcacgtcgccggtgtcgggttcgacctgtacgtgcggctggtcggtgaggccgtc
gaggcctaccgtgccgccgtcgacgggaaaaccgttgtctcgcaggaggaacagaaggac
gtccgcatcgacctgccggtcgatgcgcacctgccgcccgactacatcggcagcgaccgg
ctacggctggaggcgtaccgccggttggccgcagcctcggacaacgccgcggtggcccgc
gtcatcgacgaactcgtcgaccggtacggaccgctgccggagcccgcgcaacgtctcgtc
gcggtcgccaggttgcgtctgctgtgccgcgagtacggggtcaccgaggtgtccaccgtc
tcggactccaccctgaaggtgtcgccgttgacgctgcaggattcgggtcagttgcggctc
aagcgcatctacccgggctcggcctaccgtgccacgacatcgacggtccagatcccgatc
ccacgggcgggcagtggggtaggtgcgccgcgcatccgcgatctggacctgctgcaagca
gtggcgggaatgctgttggccctcgacggccgaccagccgatgaggtcgacatcaccggc
ggcacagcaacatccgagccaggggcggaccggtga
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