Mycobacterium intracellulare subsp. yongonense: OEM_10730
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Entry
OEM_10730 CDS
T02732
Name
(GenBank) hypothetical protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
myo
Mycobacterium intracellulare subsp. yongonense
Pathway
myo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
myo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OEM_10730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
myo03400
]
OEM_10730
Enzymes [BR:
myo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OEM_10730
DNA repair and recombination proteins [BR:
myo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OEM_10730
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
Cas3-like_C_2
ResIII
UB2H
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AGP62608
LinkDB
All DBs
Position
1057263..1060934
Genome browser
AA seq
1223 aa
AA seq
DB search
MEFIMTAPGAARPETPIAGLVELALTAPTFQQLIDSAAASPAELHLVGPASARLFVASAL
ARLGPLLVVTATGREADDLTAELRGVFGDAVAVFPSWETLPHERLSPGVDTVGARLTVLR
RLAHPDDARLGPPLQVVVTAARSLLQPMTPQLGLIEPVTLNVGAEVEFEDVIARLVELAY
TRVDMVGRRGEFAVRGGILDVFPPTAEHPVRIEFWGDEVSEMRMFSVADQRSIPEIEVDI
LIAVPCRELLLTEEVRQRAAELSARHPATEPAITGSVTDMLAKLAEGIAVDGMEALLPVL
RPGEHVLLTDQLAQGTPILLCDPEKIRTRAADLIKTGSEFLEASWSAAAMGTDAPVDVAQ
FGGSGFAELDDVRAAAAKGGHPWWTLSQLSDESAVELDIRAAPSARGHQHDIDGIFAMLR
AHVSTGGYAVVVAPGAGTAHRVVERLAECDTPAAMLEPGAAGQVRPKKGIVGVLKGPLHD
GVIIPGATLVVITETDLTGSRVAAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFV
EMVERTVGGARREYLVLEYASSKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSKLGGSDW
ANTKTKARRAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGYTETVDQLTAIT
EVKGDMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFA
DRMTGFPVTVKGLSRFTDPAESKAVIEGLADGSVDVVIGTHRLLQTGVRWKDLGLVVVDE
EQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYV
GPHDDKQVAAALRRELLRDGQVFYVHNRVSSIDRTAAKIRELVPEARVVVAHGQMPEERL
ERTVQGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERG
YAYFLYPPHAPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGV
GFDLYVRLVGEAVEAYRAAADGHTVTTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEAYR
RLAAAASDGEIDAVVEELVDRYGALPEPALRLVAVARLRLLCRAAGITEVSAPSAATVRL
SPMTLPDSAQVRLKRMYPAASYRATTSTVQVPIPRAGGVGAPRLRDVELVQMVANLVTAL
QGKAQTDIGITSELPASMTSEGR
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atggaattcatcatgaccgcaccgggggctgctcgcccagaaaccccgatcgcggggctc
gttgaattggcgctcaccgcgccgaccttccagcagctgatcgacagcgcggccgcgtcg
ccggccgagctgcacctggtgggtccagccagcgcacggttgttcgtggccagcgcgctg
gcgcggttgggtcctttgctggtagtcaccgcgaccgggcgcgaagccgacgacctgacc
gctgaactgcgcggcgtcttcggcgatgccgtcgcggtattcccgtcctgggagacgctg
ccgcacgagcggctctcgcccggcgtcgacaccgtcggcgcccggctgaccgtgctgcgg
cgcctggcccaccccgacgacgcgcggctgggccctccgcttcaggtcgtggtcaccgcg
gcccgctcgctgctgcagccgatgacaccgcagctcggcctgatcgagccggtcacgttg
aacgtcggtgcggaagtcgaattcgaggacgtgatcgcccggctggtcgagctggcctac
acccgggtcgacatggtgggccggcgcggcgagttcgccgtgcgcggcgggattctcgac
gtcttcccgccgacggccgagcacccggtgcgcatcgagttctggggcgacgaggtcagc
gagatgcggatgttctccgtcgccgatcagcgttcgatcccggagatcgaggtcgacatc
ctgatcgcggtgccctgccgcgaactgctgctcacggaggaagtgcggcaacgggccgcc
gagctgtccgcgcggcacccggcgaccgagcccgcgatcaccggcagcgtcaccgacatg
ctggccaagctcgccgagggcatcgcggtcgacggcatggaggccctgctgcccgtgctg
cggcccggcgagcacgtgctgctgaccgaccaactggcgcagggcaccccgatcctgttg
tgcgaccccgagaagatccgcacccgcgccgccgacctgatcaagaccggcagcgaattc
ctcgaagcctcgtggtcggcggccgccatgggcacggacgcccccgtcgacgtcgcgcaa
ttcggcggatcgggattcgccgagctggacgacgtgcgggccgcggccgccaagggcggg
catccgtggtggacgttgagccagttgtccgacgagtcggccgtcgagctggacatccgg
gcggcgccctcggcgcgcggccatcagcacgacatcgacggcatcttcgcgatgctgcgc
gcgcacgtcagcaccggcggctacgccgtcgtcgtcgcccccggcgccggcaccgcgcac
cgcgtggtggaacggctggccgaatgcgacacgcccgccgccatgctggaacccggggcc
gcaggccaagttcggcctaaaaagggcatagtcggcgtgctcaagggcccgctgcacgac
ggcgtcatcatccccggcgccacgctggtggtgatcaccgagaccgacctcaccggcagc
cgggtcgccgccgtcgagggcaagcgcctggcggccaagcggcgcaacaccgttgacccg
ttggcgctcaccgccggtgacctcgtcgtgcacgatcagcacggcatcggccggttcgtg
gagatggtcgagcgcaccgtcggcggtgcccgccgcgagtatttggtgctggagtacgcg
tccagcaagcgcgggggcgggtccgacaagctttatgtcccaatggattcgctggatcag
ctgtcgcggtacgtcggcgggcaggcgccggcgctgagcaagctcggcggcagcgactgg
gcgaacaccaagacgaaggcgcgccgcgcggtgcgcgagatcgccggcgagctggtgtcc
ctgtacgccaagcgacaggccagccccgggcacgcgttcggcccggacaccccgtggcag
gccgagatggaagacgcgttcgggtacaccgagaccgtcgaccagctgaccgcgatcacc
gaggtcaagggggacatggaaaagccgatcccgatggaccgggtgatctgtggcgacgtg
ggctacggcaagaccgagatcgcggtgcgggcggcgttcaaggcggtccaggacggcaag
caggtggccgtgctggtgcccaccacgctgctggcagaccagcacctgcagaccttcgcc
gaccggatgaccgggttcccggtgaccgtcaagggcctgtcccggttcaccgaccccgcc
gagtccaaggccgtgatcgagggcctggccgacgggtcggtggacgtggtgatcggcacg
caccggctgttgcagaccggggtgcgatggaaggacctcggccttgtcgtcgtcgacgag
gagcagcggttcggcgtcgagcacaaggagcacatcaagtcgctgcgcacccacgtcgac
gtgctgaccatgagcgccaccccgatcccgcgcacgctggagatgagcctggccgggata
cgcgagatgtcgacgatcctgaccccgcccgaggagcgctacccggtgctgacctacgtc
ggcccgcacgacgacaagcaggtcgcggccgccttgcggcgcgagctgctgcgcgacggg
caggtcttctacgtgcacaatcgcgtcagctccatcgaccggacggcggcgaagatccgg
gagctggtgcccgaggcgcgggtggtcgtcgcgcacgggcagatgcccgaagaacggctg
gaacgcacggtgcaggggttctggaaccgcgaatacgacatcctggtgtgcaccacgatc
gtggagaccgggctggacatctccaacgccaacacgctgatcgtcgagcgcgccgacacc
ttcggcctgtcgcagctgcaccagctgcgcggccgggtcggccgcagccgggagcgcggc
tacgcctacttcctgtatccgccgcatgcgccgctgaccgagaccgcctacgaccggctg
gccaccatcgcgcagaacaacgagctcggcgcgggcatggcggtcgcgatgaaggacctc
gagatccgcggcgccggaaacgtgttgggcgtcgagcagtccgggcacgtcgccggcgtc
ggcttcgacctgtacgtccgcctggtgggcgaggccgtggaggcctaccgcgcggccgcc
gacggccacacggtcacgacggccgaggagccgaaggacgtgcgcatcgacctgccggtc
gatgcccacctgccgccggactacatcgccagcgaccggctgcggctcgaggcgtaccgc
cggctggccgcggcggcctccgacggcgagatcgacgcggtcgtggaggaactcgtcgac
cgctatggcgcgctgcccgagccggccctgcggctggtggcggtggcccggctgcggctg
ctgtgccgcgccgcgggcatcaccgaggtgtcggcgccgtcggcggccaccgtgcggctc
tcgccgatgacgctgccggattcggcgcaggtgcggctcaagcggatgtatccggcggcg
agttaccgcgccacgacctccaccgtgcaggtccccatcccgcgcgccggcggggtgggc
gcgccgcggctgcgcgacgtcgagctggtgcagatggtggcaaacctggtgaccgcactg
cagggcaaagctcagacggatattggtataacgagtgaactgcctgcatcgatgacgagt
gaggggcggtaa
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