Mycobacterium intracellulare subsp. yongonense: OEM_13150
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Entry
OEM_13150 CDS
T02732
Name
(GenBank) ATP-dependent rna helicase, dead/deah box family protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
myo
Mycobacterium intracellulare subsp. yongonense
Pathway
myo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
myo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OEM_13150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
myo03019
]
OEM_13150
03009 Ribosome biogenesis [BR:
myo03009
]
OEM_13150
Enzymes [BR:
myo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OEM_13150
Messenger RNA biogenesis [BR:
myo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OEM_13150
Ribosome biogenesis [BR:
myo03009
]
Prokaryotic type
rRNA helicases
OEM_13150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
UvrA_inter
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AGP62850
LinkDB
All DBs
Position
1317832..1319535
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AA seq
567 aa
AA seq
DB search
MTLSDSSTGAASTTFADLQIHPSVLRAVADVGYESPTGIQAATIPALMAGSDVVGLAQTG
TGKTAAFAIPILSKIDVTSTATQALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGS
SYSVQLAGLRRGAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRI
LSETPEYKQVALFSATMPPAIRKLTTKYLHDPLEVSTKAKTATAENISQRYIQVAGPRKM
DALTRVLEVEPFEAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQGQRERTVAALKD
GSIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRE
RHLLKAIEKATRQTLTETALPTVEDVNAQRVAKFADSITTALGAPGIDLFRKLVQDYERE
HDTPMADIAAALALQSRDGEEFLMAPEPPPERRERRTERRDRPEKPRSTRPFATYRIAVG
KRHKIGPGAIVGAIANEGGLHRSDFGHIAIGPDFSLVELPAKLPKSTFKRLEQTRISGVL
INLQPDRSSAKARGGRDGGKPRRKHGE
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgaccctctcagacagctcgaccggggctgcctctacgacgtttgccgacctgcagatc
cacccctcggtgctgcgggcggttgccgacgtcggctacgaatcacccaccggcatccag
gccgcgacgatcccggcgctgatggcgggctccgacgtggtcgggctggcgcagaccggc
accggcaagaccgccgcgttcgccatccccatcctttccaagatcgacgtcaccagcacc
gccacccaagccctggtgctcgccccgacccgggaactggccctgcaggtcgccgaggcg
ttcagccggtacggtgcccacctgcccaagatcaacgtgctgccgatctacggcggctcg
tcctacagcgtgcagttggccgggctgcggcgcggggcgcacgtggtggtcggcacgccc
ggccgggtgatcgaccacctcgaacgggggacgctggacctgtcccacgtcgactacctg
gtgctcgacgaggccgacgagatgctcaccatgggcttcgccgaagaggtcgatcgcatc
ctgtcggagaccccggaatacaagcaggtggcactgttctccgcgacgatgccgcccgcg
atccgcaagctcaccaccaagtacctgcacgacccgctcgaggtcagtaccaaggcgaaa
accgcgaccgccgagaacatttcgcagcgctacatccaggtcgccggtccccgcaagatg
gacgcgctgacccgggtcctcgaggtcgagccgttcgaggcgatgatcgtcttcgtcaga
accaaacaggccaccgaggaagtcgccgaaaagctaagggcgcgaggtttctccgccgca
gccatcaacggggacatcccgcagggccagcgcgagcggaccgtcgccgccttgaaggac
ggcagcatcgacatcctggtcgccaccgacgtggccgcgcgcggactcgacgtggagcgg
atctcgcacgtgctcaactacgacatcccgcacgacaccgagtcgtacgtgcaccggatc
gggcgcaccggcagggccggacgttcgggcaccgcgctgctcttcgtgtcgccgcgagag
cgccacctgctcaaggcgatcgaaaaggccacgcggcaaacgctcaccgaaaccgccttg
cccaccgtcgaggacgtcaacgcgcaacgggtggccaagttcgccgattcaatcaccacc
gcgctcggggcccccggcatcgacctgttccgcaagctggtccaggactacgaacgcgag
cacgacaccccgatggccgatatcgccgccgcgctggccctgcaatcccgcgacggcgag
gaattcctgatggcgcccgaacctccgcccgagcgtcgcgagcggcgcaccgaacgccgc
gatcgccccgaaaagccaaggtctacacggccgttcgccacctatcgcatcgcggtgggc
aagcgccacaagatcggtccgggcgccatcgtgggcgccatcgccaacgagggagggctg
catcgcagcgacttcggccacatcgcgatcggcccggacttctcgttggtggaactgccg
gccaagttgcccaagtcgacgttcaaaaggcttgagcagacccgcatctcgggggtgttg
atcaaccttcagccggacaggtcctcagccaaggcccgcggcggccgggacggcgggaaa
ccgcgcaggaaacacggcgaatga
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