Mycobacterium intracellulare subsp. yongonense: OEM_13810
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Entry
OEM_13810 CDS
T02732
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
myo
Mycobacterium intracellulare subsp. yongonense
Pathway
myo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
myo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OEM_13810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
myo03021
]
OEM_13810
03019 Messenger RNA biogenesis [BR:
myo03019
]
OEM_13810
Transcription machinery [BR:
myo03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
OEM_13810
Messenger RNA biogenesis [BR:
myo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OEM_13810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA_25
NACHT
Fungal_virus_P2_C
DUF7440
VWA_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AGP62916
LinkDB
All DBs
Position
1388312..1390117
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AA seq
601 aa
AA seq
DB search
MTTDTPDAKTNASAGALSTMVLPELRALANQVGVKGTSGMRKNELIAAIKEVRGQANGVP
ANGTKSTEDSGKPDTKDDDTKDTKDDNGADAPAAKEGQNGAAPTEAPRRERRGASRDAGS
TDRANEDADRERAGGRDGGATGETDGREGKQDKDNQNENRGQGGGSEDQQGSGGQQGRGG
SNQQDDDGEGRGGRRGRRFRDRRRRGERSGEGGDAELREDDVVQPVAGILDVLDNYAFVR
TSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPKEGEQPNQRQKFNPLVRLDSVNGG
SVEDAKKRPDFSKLTPLYPNQRLRLETTPDRLTTRVIDLIMPIGKGQRALIVSPPKAGKT
TILQDIANAITKNNPECHLMVVLVDERPEEVTDMQRSVKGEVISSTFDRPPSDHTQAAEL
AIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAAR
NIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKISERRVFPAVDVNPSGT
RKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRKTKTNYEFLVQVSKTTPGMDN
D
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaccgacactcccgacgcgaagacgaacgcttcggccggcgccctgtccaccatg
gtgctgcccgagctacgcgcgctggctaaccaggtcggcgtcaaagggacgtcgggaatg
cgtaagaacgaactgatcgccgcgatcaaagaagtcaggggacaggccaacggcgtgccc
gccaacggcacgaagtccactgaggacagcggcaagccggacaccaaagacgacgacacc
aaagacaccaaggacgacaacggcgctgacgcaccggcggccaaggaaggccagaacggc
gcggcccccaccgaggcgccccgccgcgaacgacgcggcgcttcccgcgacgcgggatcg
accgaccgcgccaacgaggatgccgatcgcgagcgcgccggcggccgagatggcggcgcc
accggcgagaccgacggccgcgaaggcaagcaggacaaagacaaccagaacgagaaccgc
ggccagggtggcgggagcgaggatcaacagggctccggcggccagcagggccgtggcggg
tcgaaccagcaggacgacgacggcgaaggacgcggcggccggcggggacgccgcttccgc
gaccgccggcgccggggcgagcgctccggagagggcggcgacgccgaactgcgcgaggac
gacgtcgtccagccggtagccggcattcttgacgtcctcgacaattacgcgttcgtgcgc
acctccggctacctggccgggccccatgacgtttacgtgtcgatgaacatggtgcgcaag
aacggcctgcgccgcggtgacgccgtcaccggcgcggtgcgcgtgccgaaggaaggcgag
cagcccaaccagcggcagaagttcaacccgctggtacgcctggacagcgtcaacggcggc
tcggtcgaggacgccaagaagcgccccgatttctccaagctgacgccgctgtatcccaac
cagcgtcttcgcctggaaaccacgcccgaccggctgaccacgcgggtcatcgacctgatc
atgccgatcgggaagggccagcgtgcgctgatcgtgtcgccgcccaaggcgggtaagacg
acgatcctgcaggacatcgccaacgcgatcaccaagaacaacccggaatgccacctcatg
gtcgtgctcgtcgacgagcggcccgaggaggtcaccgacatgcagcgttcggtcaagggt
gaggtcatctcctcgaccttcgaccggccgccgtccgatcacacccaggccgccgagctg
gccatcgagcgggccaagcggctcgtcgagcagggcaaggacgtcgtcgtgctgctggac
tcgatcacacgcctcgggcgcgcctacaacaacgcctcgccggcgtcgggccgcatcctg
tccggtggtgtcgactccaccgcgctgtacccgcccaagcgcttcctgggcgccgcgcgc
aacatcgaggagggcggctcgctgaccatcatcgccaccgcgatggtcgagacggggtcc
accggtgacacggtcatcttcgaggagttcaagggcaccggtaacgccgagctcaagctg
gaccgcaagatctccgaacgccgggtcttcccggcggtcgacgtgaacccctccggcacc
cgtaaggacgaactgctgctgtcgccggacgagttcggcatcgtgcacaagctgcgccgc
gtgctgtcgggcctggattcccaccaggccatcgacctgctgatgtcgcagctgcgcaag
acgaagaccaactacgagttcctggtccaggtgtccaagacgacgcccgggatggacaac
gactag
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