Mycobacterium intracellulare subsp. yongonense: OEM_18410
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Entry
OEM_18410 CDS
T02732
Name
(GenBank) ABC transporter related protein
KO
K03701
excinuclease ABC subunit A
Organism
myo
Mycobacterium intracellulare subsp. yongonense
Pathway
myo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
myo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OEM_18410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
myo03400
]
OEM_18410
DNA repair and recombination proteins [BR:
myo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OEM_18410
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OEM_18410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
ABC_tran
AAA_21
DnaJ_CXXCXGXG
AAA_29
DUF4350
nSTAND1
Anti-TRAP
AAA_25
DUF5351
Viral_helicase1
T2SSM_b
AAA_17
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AGP63376
LinkDB
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Position
1918777..1921323
Genome browser
AA seq
848 aa
AA seq
DB search
MTQTSYGSTGEIDPCVRVYGARVHNLRGVDVVAPRDALVAFTGISGSGKSSLAFGTIYAE
AQRRYFESVAPYARRLLLPAGAPKVDDITGLPPAVALQQRRGSATSRSTVGTVTTLSNLL
RMLFSRAGTYPRGATERLDSDAFSPNTAVGACPECHGLGRIHRVTEETLVPDPALTIREG
AVAAWPGAWQGQNLRDILVTLGYDIDKPWRKLPKRQRNWILFTDEQPTVEIDPSQHPVQA
DYYYNGTFSSAERHVRHTLANSHSAMMRRRVLQFVDTVGCPVCDGSGLRPEALRVTFAGR
TIADYLAMPLGGLADTLRPTASRTDAVAAYESTTSGELTEVATMIAADLVARLQVLIDLG
LGYLTLSRRTPTVSPGELQRLRLATQLRAGLFGVLYVLDEPSAGLHPADAEPLLEVLDRL
RRAGNSLFVVEHDMDVVRRADWIVDVGAGAGELGGAVLYSGPVSGLADIEGSVTRRYLFD
GARPPRRQPRTPSGQLRLRGICFHNLKDLDVDLPLGVYTAVTGVSGSGKSTLVVKVLGDV
VHSHLGTGRAAEPAEPDDDETDSGIDDLDHDATVGVTAEGAENINRLVSVDQRPIGRTPR
STLATYTGLFDAVRREFAATPKARRRGWTAGRFSFNVADGRCPTCQGEGFVSVELLFLPG
TYATCPACQGARYSDETLEVRYRDRTIADVLAMTVDEASEFLADVASAARSLTTLQEVGL
GYLRLGQPATELSGGEAQRIKLAAELQRPRRGHTLYVLDEPTTGLHPADVDLLDSQLHRL
VDAGNTVVVAEHYMRMVAGADWVIDLGPGAGSDGGRVVAAGPPERVARAKRSRTAPYLAK
RLAPSGTR
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaaacgtcctacggaagcaccggcgaaatcgatccttgtgtgcgcgtttacggg
gcgcgggtgcacaatctgcggggtgtcgacgtcgtagcgccgcgtgacgcgctggtcgca
tttaccggaatctccggatcgggcaaatcgtcgttggccttcgggaccatctatgccgag
gcccagcgccgctacttcgaatcggtcgctccgtacgcccgccgcctgctattgcccgcc
ggcgcgccgaaggtcgatgacatcaccgggctaccgcctgccgtcgcactgcagcagcgc
aggggttcggcgacatcgcggtcgacggtcggcaccgtcaccaccctgtcgaacctgttg
aggatgctgttctcccgcgccgggacctatccgcggggggccacggaacgactggactcc
gatgcgttctcgccgaacaccgcggtgggggcgtgccccgaatgtcacgggctgggacga
atccatcgggtgaccgaagagacactggtgccagaccccgcgctgaccatccgcgaaggc
gctgtcgccgcatggcccggcgcgtggcagggccaaaacctccgcgacatcctcgtcacg
ctgggctacgacatcgacaagccgtggcggaaactgcctaagcgtcaacgcaattggatt
ctgttcaccgatgagcagccgaccgtcgaaatcgatccgagccagcaccccgtgcaagcc
gattattactacaacggcacgttctccagcgccgaacgccatgtccgccacacgttggcc
aactcccatagcgcgatgatgcgacgccgcgtattgcaattcgtcgacacggtcggatgc
ccggtatgcgacggctctgggttgcggccggaggcgttgcgggtgaccttcgccgggcgc
accatcgccgactacttggccatgccattgggcggcctcgcggacacgttgcgcccgacg
gcttctcggaccgacgccgtcgccgcctacgagtccacgacatccggcgagctgacggaa
gtggcgaccatgatcgccgctgacctggtcgcacgcctgcaggtactcattgatctcggc
ctcggctatctcacgctcagtcgccggaccccgaccgtgtcacccggcgaactgcagcgg
ttgcggctggccacccaactgcgcgccggcttgttcggcgtgctctatgtgttagacgaa
ccgtcggccggtctgcacccggccgacgccgagccgctcctcgaggtgctcgatcgcctc
cggcgcgcgggcaattcgttattcgtggtcgagcacgacatggacgtcgtgcgccgcgcc
gactggatcgtcgacgttggcgctggggccggagagctcggtggcgccgtgctctacagc
gggccggtgtccggcctcgccgacatcgaggggtcggtcactcgtcgctaccttttcgac
ggtgcccggccgccgcgtcgacaaccacgcacgccgtccgggcaattgcggctgcgcggg
atctgctttcataatttgaaagacctcgacgtggacctgcccctcggcgtgtacacggcg
gtcaccggggtgtccggttccggcaagtcgacactcgtcgtcaaggtcctcggcgatgtc
gtgcacagccatctcggcaccggacgagcggccgagccggccgaacccgacgacgacgaa
accgacagcgggatagacgatctcgatcatgacgcgactgtcggtgtgacggcagagggg
gccgaaaacatcaaccggctggtatcggtcgaccagcgtccgatcggacgcacgccgcgc
tcgacgctggcgacctacaccggcctgttcgacgccgtgcgccgtgaattcgctgcgacc
ccgaaggcccgtcgccgcggttggacggcgggcaggttctcgttcaacgtggccgacggt
cgctgccccacctgtcagggggagggtttcgtgtcggtcgaattgttgttcctgccaggc
acatacgccacctgcccggcgtgccaaggagcgcggtactccgacgagacactcgaggtt
cgctatcgcgaccgtacgatcgccgatgtcctcgcgatgaccgtcgatgaggcttcggag
tttcttgccgacgtcgccagcgcggcgcgcagcctgaccacgctgcaagaggtcggcctc
ggatatctgcgtctcggacagcccgccaccgagctgtcgggcggcgaggcacagcggatc
aagctcgccgccgaactgcagagaccccggcgagggcacaccctctacgtcctcgacgag
ccgaccaccgggctgcaccccgccgatgtggatctgctcgatagtcaactgcaccgcctg
gtcgacgcgggcaacaccgtggtggtggccgagcactacatgcggatggtcgcgggtgcc
gactgggtgatcgacttgggaccgggagccggcagcgacggcggccgggtcgtcgcggcg
gggccacctgagcgcgtggcacgggccaaacggagccgcacggcgccgtatctggcgaag
cggttggcgccgtccggcactcggtga
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