Mycobacterium intracellulare subsp. yongonense: OEM_29120
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Entry
OEM_29120 CDS
T02732
Name
(GenBank) putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
myo
Mycobacterium intracellulare subsp. yongonense
Pathway
myo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
myo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OEM_29120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
myo03400
]
OEM_29120
Enzymes [BR:
myo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OEM_29120
DNA repair and recombination proteins [BR:
myo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OEM_29120
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Alpha_TIF
Motif
Other DBs
NCBI-ProteinID:
AGP64447
LinkDB
All DBs
Position
3110922..3111812
Genome browser
AA seq
296 aa
AA seq
DB search
MARVDVEITHPDRVLFPADGITKRDLAAYYDQVADTMLTHLRGRALNVQRYPRGIAETGF
IQQDFADSLPDWMSSVRVAKEGGTVEHPVVERPEALRWLANQSCITLHMWQSRRARLDNP
DRLVFDLDPSDGDFAVVRATARATAGILGDLGLACYVQTTGSRGLHVVAPLRADTDFDTA
RQFAREVSEVVAADDPAHRTVEARKGKRDGRVYLDIMRNAYAQTAVAPYSVRARNGAPVA
TPLEWDELDAGRLRADRFTIRDVPKRLAGQPDPWAHMTRHARSLAGPMRRLARLRA
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atggcccgcgtcgacgtcgagatcacccacccggaccgcgttctgtttcccgccgacggg
atcacgaaacgcgatctcgccgcctactacgaccaggtggccgacaccatgttgacgcac
ctgcggggccgggccctcaacgtgcagcgctatccccgcggcatcgccgaaacagggttc
atccagcaggatttcgccgattcgctacccgactggatgagtagtgtccgggtggccaag
gagggcggcaccgtcgagcatccggtcgtcgaacggccggaggcgctgcgatggctggcc
aatcaaagctgcatcaccctgcacatgtggcagtcgcgccgggcccggctggacaacccg
gaccggctcgtcttcgacctcgatccgtccgacggcgacttcgccgtggtgcgagcgacc
gcacgcgccacggccgggatactcggggacctgggcctggcgtgctacgtccagaccacc
ggctcgcgcgggttgcacgtcgtggctcccttgcgcgccgacaccgatttcgacaccgcc
cggcagttcgcccgcgaggtcagcgaagtggtcgccgcggacgatcccgctcatcgcacc
gtggaggctcgcaagggcaagcgcgacggacgggtctatctcgacatcatgcgaaacgcc
tacgcgcagacggcggtcgcgccgtattcggttcgggcccgcaacggcgcgccggtagcc
accccgctggaatgggacgagctggacgcggggcggttgcgggccgaccggttcaccatc
cgagacgttcccaaacggcttgccggacaaccggatccgtgggcgcacatgacgcggcac
gcccgctcactggccggcccgatgcggcgattggcgaggctgcgtgcctga
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