Mycolicibacterium sp. TUM20985: TUM20985_05540
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Entry
TUM20985_05540 CDS
T11065
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
myq Mycolicibacterium sp. TUM20985
Brite
KEGG Orthology (KO) [BR:
myq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
myq03032
]
TUM20985_05540 (topA)
03400 DNA repair and recombination proteins [BR:
myq03400
]
TUM20985_05540 (topA)
Enzymes [BR:
myq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
TUM20985_05540 (topA)
DNA replication proteins [BR:
myq03032
]
Prokaryotic type
DNA Topoisomerases
TUM20985_05540 (topA)
DNA repair and recombination proteins [BR:
myq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
TUM20985_05540 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Rep_1B
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
BDX30007
LinkDB
All DBs
Position
582064..584883
Genome browser
AA seq
939 aa
AA seq
DB search
MADQDSGSGNRGIRRLVIVESPTKARKIAGYLGSNYIVESSRGHIRDLPRAAADVPAKYK
SEPWARLGVNVDADFEPLYIISPEKKSTVTELKSLLKNVDELYLATDGDREGEAIAWHLL
ETLKPTIPVKRMVFHEITESAIRAAADDPRDLDIDLVDAQETRRILDRLYGYEVSPVLWK
KVAPKLSAGRVQSVATRIIVQRERERMAFRSAGYWDVTAELDASVSDAQASPPRFTAKLN
SVDGKRVASGRDFDSLGGVRKPDEVRVLDEASASALAGGLRGAQLSVASVEQKPYTRRPY
PPFMTSTLQQEAGRKLRFSSERTMSIAQRLYENGYITYMRTDSTTLSETAINAARNQARQ
LYGEEYVHPTPRQYTRKVKNAQEAHEAVRPSGDVFQTPGQLHSALDNDEFRLYELIWQRT
VASQMADARGTTLSLRIAGESRTGEQVVFNASGRTITFPGFLKAYVESLDEQAGGEADDA
ESRLPNLTQGQRVDASDLTADGHTTSPPARYTEASLIKSLEELGIGRPSTYSSIIKTIQD
RGYVHKKGSALVPSWVAFAVIGLLEQHFGRLVDYDFTAAMEDELDQIASGNERRTNWLNN
FYFGGDHGVDGSIARAGGLKKLVGGNLEEIDAREVNSIKLFDDDQGRAINVRVGRNGPYL
ERMVVDEDGEPGELKPQRANLKDELTPDELTLELAEKLFSTPQEGRSLGVDPATGHEVVA
KDGRYGPYVTEVLPAPPEEPDDGAPAKKGKKPPVGPKPRTGSLLQSMDLETVTLEDALRL
LSLPRVVGVDPANGEEITAQNGRYGPYLKRGTDSRSLANEDQMFTVTLDEALKIYAEPKR
RGKQGAATPPLRELGTDPVSEKPMVIKDGRFGPYVTDGETNASLRKGDDVMSITDGRASE
LLADRRARGPVKKKAPAKKAAKKTPAKKAPAKKAAAKKG
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
ttggctgaccaggacagtggcagcggcaaccgcgggatcaggcgactcgtcatagtcgag
tcgcctaccaaggcgcgcaaaatcgccgggtatctggggtccaactacatcgtcgaatcg
tcgcgtggacacattcgcgacctcccacgcgccgcggccgacgtccccgccaagtacaag
tcggaaccgtgggcgcggctcggggtgaacgtcgacgccgacttcgaaccgctctacatc
atcagtcccgagaagaagagcaccgtcaccgagctcaagagcctgctcaagaacgtcgac
gagctctacctcgcgacggacggtgaccgtgagggcgaggccatcgcctggcatctgctc
gagacgctgaaaccgaccattcccgtcaagcggatggtcttccacgagatcaccgagtcg
gccatccgggcggccgccgacgaccctcgcgacctcgacatcgatctggtcgacgcgcag
gagacccggcgcatcctcgaccggctctacggctacgaggtcagccccgtgctgtggaag
aaggtggccccgaagctgtccgccggccgagtgcagtcggtggccacccggatcatcgtg
cagcgcgagcgtgagcgcatggcgttccgcagcgccggctactgggacgtcaccgcggaa
ctggacgccagcgtctcggacgcccaggcatccccgccccggttcacggccaagttgaac
tccgtggacggcaagcgggtcgccagcggccgggacttcgactcgctcggaggggtccgc
aagcccgacgaggtgcgggtgctggacgaggcgtcggcgtcggccctggccggcggactg
cggggggcccagctctccgtggcgtcggtggagcagaagccctacacccgccggccgtat
ccgccgttcatgacctccacgctgcagcaggaggccggccgcaagctgcggttcagctcg
gagcgcacgatgagcatcgctcagcggctgtacgagaacggctacatcacctacatgcgt
accgactcgacgaccctgtccgagacggcgatcaacgcggcccgcaaccaggccaggcag
ctctacggcgaggagtacgtccatccgacgccccgccagtacacccgcaaggtcaagaac
gcgcaggaggcccacgaggcggtcaggccgtccggtgacgtcttccaaaccccgggacag
ttgcactccgcgctggacaacgacgagttccggctctacgagctcatctggcagcggacg
gtcgcctcgcagatggccgatgcccgcggaacgacgctctcgctgcgcatcgctggtgaa
tcacgtaccggcgagcaggtcgtgttcaacgccagcggccgcaccatcacgttcccgggc
ttcctgaaggcctacgtcgagagcctcgacgagcaggccggcggcgaggccgacgacgcc
gagagccgactgcccaacctgacgcaggggcaacgcgtcgacgcctccgacctgaccgcc
gacgggcacaccaccagcccgccggcccgctacaccgaggcgtcgctgatcaagtcgctc
gaagagctcggcatcggtcggccgtcgacctactcgtcgatcatcaagacgattcaggac
cgcggttacgtccacaagaagggcagtgcgctggtcccgtcgtgggtggcgttcgccgtc
atcgggctgctcgaacaacacttcgggcgcctcgtcgactacgacttcaccgcggccatg
gaggacgagctcgaccagatcgcctcgggtaacgaacgaaggacgaactggctcaacaac
ttctacttcggcggcgatcacggggttgacggctcgattgcccgcgcaggtgggctcaag
aagctggtcggcggcaacctcgaagaaatcgacgcgcgagaagtcaactccatcaagctg
ttcgacgacgatcaggggcgggcgatcaacgtccgcgtcggccgcaacgggccgtacctg
gagcgaatggtcgtcgacgaggacggcgaacccggagagctcaagccgcagcgcgccaat
ctgaaggacgagctgacccccgacgagctcaccctcgagctcgccgagaagctgttctcc
acaccgcaggagggccgcagcctcggcgtcgacccggcgacgggtcacgaggtcgtcgcc
aaggacggccgctacggcccctacgtcaccgaggtgctgcccgcgccgccggaggagccg
gacgacggtgcgccggcgaagaagggcaagaagcctccggtcggcccgaagccgcgtacc
ggttcgctgctgcagtcgatggacctcgagacggtgacgctcgaggacgcactgaggctg
ctgtcgctgccgcgggtggtcggcgtcgaccccgcaaacggcgaggagatcaccgcgcag
aacgggcggtacggtccatacctcaagcgcggcaccgactctcgctcactggccaacgaa
gaccagatgttcaccgtcaccctcgacgaggcactcaagatctacgccgagcccaagcgg
cgcggcaagcagggggccgcgacgccgccccttcgcgagttgggtaccgacccggtgtcg
gagaagccgatggtgatcaaggacggccgcttcggtccgtacgtcaccgacggcgagacc
aacgccagcctgcgcaagggcgacgacgtcatgtcgatcaccgatggcagggcatccgaa
ctgctggccgaccgtcgcgcgcggggcccggtgaagaagaaggcgcccgcgaagaaggcg
gcgaagaagacgcccgccaagaaggcgcccgcgaagaaggccgcagccaagaagggctag
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