Mycolicibacterium sp. TUM20985: TUM20985_14040
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Entry
TUM20985_14040 CDS
T11065
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
myq Mycolicibacterium sp. TUM20985
Pathway
myq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
myq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TUM20985_14040 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
myq03019
]
TUM20985_14040 (deaD)
03009 Ribosome biogenesis [BR:
myq03009
]
TUM20985_14040 (deaD)
Enzymes [BR:
myq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TUM20985_14040 (deaD)
Messenger RNA biogenesis [BR:
myq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TUM20985_14040 (deaD)
Ribosome biogenesis [BR:
myq03009
]
Prokaryotic type
rRNA helicases
TUM20985_14040 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
Transketolase_C
HEM4
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
BDX30857
LinkDB
All DBs
Position
1429724..1431334
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AA seq
536 aa
AA seq
DB search
MLRALADVGYESPSAIQAATIPPMMAGSDVVGLAQTGTGKTAAFAIPILSRIDTSSRTTQ
ALVLAPTRELALQVAEAFSRYGAHLPVNVLPIYGGSSYGPQLAGLKRGAQVVVGTPGRVI
DHLEKGSLDVSHLDYMVLDEADEMLQMGFAEDVERILAETPEYKQVALFSATMPPAIRKI
TNKYLHDPVQVTVKSKTATAENISQRYIQVAGPRKMDALTRLLEVEPFEAMIVFVRTKQA
TEEVAEKLRARGFSAAAINGDIAQAVRERTISQLKDGTIDILIATDVAARGLDVERISHV
LNYDIPHDPESYVHRIGRTGRAGRSGAAVLFVTPREKHLLHSIERVSRQKLVESQLPSVD
DVNDKRVEKFRESITEALNAPGIELFRKLIEGYERDHDVPTAEIAAALAVQSRGGGEFLM
TEPPPEKRRERPDRDSGADGPPRKRRDNVRSDLATYRIAVGKRHKVGPGSIVGAIANEGG
LHRSDFGHITIKMDHSLVELPAKLSNETLKKLEHTRISGVLINLQQDRGPSHHTSK
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
gtgctgcgggccctggccgacgtcgggtatgagtcgccgtcggccatccaggccgccacg
attccgccgatgatggcgggctccgacgtcgtcggcctggcgcagaccggaacgggtaag
acggcggcgttcgccatcccgatcctgtcgcggatcgacacctccagccgcaccacgcag
gccctggtactggctccgacgcgcgagttggcgctgcaggtcgccgaggcgttcagccgg
tacggcgcccacctgccggtgaacgtgctgcccatctatggcggctcgtcgtacggcccg
cagctcgccggactgaagcgtggcgcgcaggtcgtggtcggcacgcccggccgggtgatc
gaccacctcgagaagggcagcctcgacgtctcgcacctggactacatggtgctcgacgag
gccgacgagatgctgcagatgggcttcgccgaggacgtcgaacgcatcttggccgagacg
cccgaatacaagcaggtggcgttgttctcggcaaccatgccgccggcgatccgcaagatc
accaacaagtatctgcacgaccccgtccaggtgacggtcaagtcgaagaccgccacggcg
gagaacatctcgcagcgctacatccaggtcgccggtccgcggaagatggacgcgctcacg
cggctgctcgaggtggaaccgttcgaggcgatgatcgtgttcgtccggaccaagcaggcc
accgaggaggtcgccgagaagctgcgggcgcgcgggttctcagccgcggcgatcaacggt
gacatcgcccaggcggtgcgcgagcgcaccatcagccagctgaaggacggcacgatcgac
atcctgatcgccaccgacgtggcggcgcgcgggttggacgtcgagcgcatctcgcacgtg
ctcaactacgacatcccgcacgatcccgagtcctacgtgcaccgcatcgggcgcaccggc
cgggccgggcgctccggcgcggccgtgctgttcgtcacgccgcgggagaagcacctgctg
cactcgatcgagcgcgtgtcccggcagaaactcgtcgagtcccagctgccgtcggtcgac
gacgtcaacgacaagcgggtggagaaattccgcgagtcgatcaccgaggcgctgaacgcc
ccgggaatcgagttgttccgcaagctgatcgagggttacgagcgcgaccacgacgttccg
acggccgagatcgccgccgcgctggcggtgcagagccgcggcggcggtgagttcttgatg
accgagccgccccccgagaagcggcgcgagcggcctgaccgcgactcgggtgccgacggc
ccgccgcgcaagcgccgcgacaacgtccgcagcgatttggcgacctaccgcatcgcggtg
ggcaagcggcacaaggtcggtcccggatcgatcgtcggggcgatcgccaacgaaggtggc
ttgcaccgcagcgacttcgggcacatcaccatcaagatggaccactcgctggtcgagttg
cccgccaagctgtccaacgaaacgctgaagaagctcgagcacacccgcatctcgggcgtg
ctgatcaacctccaacaagatcgcggaccgagccaccacacctcgaagtga
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