Mycobacterium antarcticum: TUM20985_47440
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Entry
TUM20985_47440 CDS
T11065
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
myq Mycobacterium antarcticum
Pathway
myq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
myq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TUM20985_47440 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
myq03021
]
TUM20985_47440 (rpoC)
03400 DNA repair and recombination proteins [BR:
myq03400
]
TUM20985_47440 (rpoC)
Enzymes [BR:
myq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TUM20985_47440 (rpoC)
Transcription machinery [BR:
myq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TUM20985_47440 (rpoC)
DNA repair and recombination proteins [BR:
myq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TUM20985_47440 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BDX34197
LinkDB
All DBs
Position
complement(4832558..4836508)
Genome browser
AA seq
1316 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIVCERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITAVDTEQRHNDQSTLEAEMVVEKKAVEDQRDLDLAERSQKLEAD
MAELEKDGAKSDVRRKVRDGGEREMRQLRDRAQRELDRLDEVWTTFVKLAPKQLIVDEVL
YRELIDRYGEYFNGAMGAESIKKLIENFDIDAEAESLRDTIKNGKGQKKLRALKRLKVVA
AFQMNRNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVISEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFFLTTEIEGDTGEYT
APAKDQPESGVYGSPAEAQMAVDRGVLSVRSKIKVRLTTQRPPADVEASLFPEGWKMGNA
WLAETTLGRVLFNELLPRGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAGF
HWATRSGVTVSMADVLVPPNKAQILDGYEQQADAIEKKYQRGLLEKIERTDALVKIWKEA
TEEVGNALRDHYPASNSIIQLIDSGATGTFNQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVLEYFINTHSARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMTTI
AAPEADGSLTRDAHVETSTYARTLAVDAVDAKGNVIVERGHDLGDPAIDALLAAGITEVK
VRSVLTCMTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFKQEGGV
GEDITGGLPRVQELFEARVPRNTAPIADVTGRVNIEVGEKFYKMTIVPDDGGEEVVYDKL
TRRQRLKVFKHEDGSERLLTDGDHVVVGQQLMEGSANPHEVLRVQGPREVQIHLVKEVQE
VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFESANRRVVSEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDRLNGLKENVIIGKLIPA
GTGISRYRNITVQPTEEARAAAYTIPSYEDQYYSPDFGQGAGQAVPLDDYGFSDYR
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgaactccgcattggcctcgccactgcggatgacatc
cgcaattggtcctacggcgaagtcaagaagccggagaccatcaactaccgcacgctcaag
ccagagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcgtctgtgagcgctgcggcgtc
gaggtgactcgcgccaaggtgcgtcgtgagcggatgggccacatcgaactggccgcaccc
gtcacgcacatctggtacttcaagggcgtgccctcgcgtttgggctacctgctggacctg
gccccgaaggatctcgagaagatcatctactttgcggcctacgtgatcaccgccgtcgac
accgaacagcggcacaacgaccagtccacgctcgaggccgagatggtcgtcgagaagaag
gcggtcgaggatcagcgcgatctcgatctggcggagcgtagccagaagctcgaggccgac
atggccgagctcgagaaggacggcgccaagtccgacgtccgtcgcaaggtccgtgacggc
ggcgagcgcgagatgcgtcagcttcgcgaccgggcccagcgcgagctggaccgcctcgac
gaggtgtggacgacgttcgtcaagctggctcccaagcagctgatcgtcgacgaggtgctc
taccgcgagctaatcgaccgctacggcgagtacttcaacggcgccatgggcgcggagtcg
atcaagaagctgatcgagaacttcgacatcgacgccgaggccgagagcctgcgcgacacc
atcaagaacggcaagggccagaagaagcttcgggccctcaagcgactgaaggtcgtcgcg
gcgttccagatgaaccgcaactccccgatgggcatggtgctcgacgccgttccggtgatc
ccgccggaactgcgcccgatggttcagctcgacggtggccgcttcgccacctccgacttg
aacgatctgtaccgacgcgtcatcaaccgcaacaaccggttgaagcgactgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcgcatgcttcaggagtccgttgacgcg
ctgttcgacaacggtcgtcgtggccgccccgtcaccggaccgggcaaccggccgctgaag
tcgctgtccgatctgctcaagggcaagcagggtcggttccgtcagaacctgctcggcaag
cgcgtggactactcgggccgttcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgccgaagctgatggccctcgagctgttcaagccgttcgtgatgaagcgtctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcggatggtcgaacgtcagcgc
ccgcaggtgtgggacgtcctcgaagaggtcatctccgagcaccccgtgctgctgaaccgt
gcaccaacgctgcaccggttgggcatccaggccttcgagccgatgctggtcgagggcaag
gcgattcagctgcacccgctggtctgtgaggcgttcaacgccgacttcgacggtgaccag
atggcagtccacctgccgctgtccgccgaggcgcaggccgaggcgcgcatcctgatgctg
tcgtcgaacaacatcctgtctcccgcgtcgggccgcccgttggccatgccgcgtctggac
atggtgacgggcctgttcttcctgaccaccgagatcgaaggcgacacgggcgaatacacg
gctcccgccaaggatcagccggagtccggtgtgtacggttcgccggccgaggcgcagatg
gccgtcgatcgcggcgtgctgagcgtgcggtcgaagatcaaggttcggctgaccacgcag
cgtccgccggccgacgtcgaggcgtcgttgttccccgagggctggaagatgggcaacgcc
tggttggcggagaccacgctgggccgcgtgctgttcaacgagcttctgccgcggggctac
ccgttcgtcaacaagcagatgcacaagaaggtccaggcggcgatcatcaacgatctcgcc
gagcgctacccgatgatcgtcgtggcgcagaccgtcgacaagctcaaggacgccggcttc
cactgggccacccgctcgggtgtcaccgtgtccatggccgacgtgctggtgccgccgaac
aaggcacagatcctcgacggctacgagcagcaggcggatgccatcgagaagaagtaccag
cgcggcctgctcgagaagatcgagcggaccgacgcgttggtgaagatctggaaggaagcc
accgaagaggtgggcaatgccctccgcgaccattacccggcgtcgaactcgatcatccag
ctgatcgactcaggtgccaccggtacgttcaaccagacgcgcacgctggccggcatgaag
ggcctggtgacgaacccgaagggtgagttcatcccgcgccccatcaagtcgtccttccgt
gagggcctgaccgtgttggagtacttcatcaacacgcacagcgcccgaaagggtctggcg
gacaccgcacttcgtacggcggactcgggttacctgacccgtcgtctggtcgacgtgtct
caggacgtcatcgttcgtgagcacgactgccagaccgagcgcggcatcatgaccacgatt
gcggcgccggaggccgatggctccctgacccgcgacgcacacgtcgagacctcgacgtat
gcgcggacgctggccgtggacgcggtcgacgccaagggcaacgtgatcgtcgagcgtggg
cacgacctgggtgatccggcgatcgatgcgctgctcgccgcgggcatcaccgaggtgaag
gtccgctccgtgctgacctgcatgacaggcaccggcgtctgcgccacgtgctacggccgt
tcgatggccaccggcaagctggtcgacatcggtgaggcggtcggcatcgtcgccgcgcag
tccatcggcgagcccggcacgcagctgaccatgcgtacgttcaagcaggagggcggcgtc
ggtgaggacatcaccggtggtcttcctcgcgtgcaggagctgttcgaggcccgcgtgccc
cgcaacaccgctcccatcgcggacgtcaccggtcgggtcaacatcgaagtgggcgagaag
ttctacaagatgacgatcgtcccggacgacggtggcgaggaagtcgtctacgacaagctc
acccgtcgtcagcgcctgaaggtgttcaagcacgaggacggctccgagcgtctgctgacc
gacggtgaccacgtcgtggtcggccagcagctgatggagggctcggccaacccgcacgag
gtgctgcgcgtccagggtccccgcgaggtgcagatccacctcgtcaaggaggtccaggag
gtctaccgcgcccagggtgtgtcgatccacgacaagcacatcgaggtcatcgtccggcag
atgctgcgtcgcgtgacgatcatcgattcgggctcgacggaattcctgcccggctcgctc
accgagcgtgctgagttcgagtccgcgaaccgtcgcgtcgtgtccgagggtggcgagccc
gcggccggacgtccggtgctgatgggtatcacgaaggcatcgctggccacggattcgtgg
ttgtcggcggcgtcgttccaggagaccacgcgagtcctgaccgatgcggcgatcaactgc
cgcagcgaccggctcaacggtctgaaggagaacgtgatcatcggcaagctgatcccggcc
ggtaccggcatcagccgctaccgcaacatcacggtgcagccgaccgaggaagctcgggcc
gccgcgtacacgatcccgtcctacgaggatcagtactacagcccggacttcggtcagggt
gcaggccaggcagtgccgctggacgattacggattcagcgactaccggtag
DBGET
integrated database retrieval system
