Myroides sp. A21: MYRA21_0030
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Entry
MYRA21_0030 CDS
T03521
Name
(GenBank) Superfamily II DNA and RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
myr
Myroides sp. A21
Pathway
myr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
myr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MYRA21_0030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
myr03019
]
MYRA21_0030
03009 Ribosome biogenesis [BR:
myr03009
]
MYRA21_0030
Enzymes [BR:
myr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MYRA21_0030
Messenger RNA biogenesis [BR:
myr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MYRA21_0030
Ribosome biogenesis [BR:
myr03009
]
Prokaryotic type
rRNA helicases
MYRA21_0030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
P-loop_SecA
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AJA67275
LinkDB
All DBs
Position
30885..32195
Genome browser
AA seq
436 aa
AA seq
DB search
MNKAEILKNLNIEALNEMQTKAFSAAQKNPNIILLSPTGSGKTVAFLMPLLERLDPAIRG
VQAVILVPTRELALQIETVFKKMGTPFKINSCYGGHSTKTEIKNFSTPPAVLVGTPGRVA
FHVEEFSFNTETVTSYVVDEFDKALEMGFQTDMDYIINSFDNISFRMLTSATALKKIPEF
TGIVDPERIHFLKKTEVMPDLTFSQVISTAEEKLETVIKLIGKIGKDTILIFCNHRDAVA
RISETLTKKGVANSAFHGGMLQEDRERAIMKFRNKSAHILIATDLAARGLDIPEIGHVIH
YQIPQKEDAFIHRNGRTARMKASGKAYVMITKEENIEFINPDMPIEDLDGSYTIDNKTDF
KTIYISAGKKDKVNKGDIVGYLIKTGGLTKEDIGVIDVRDTQAFVAVNTKKVKALLTALV
DTRLKNKRVKIEIARD
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagcagagatacttaaaaacttaaatattgaggcattaaatgaaatgcaaacc
aaagcatttagtgcagctcagaagaacccaaatattatccttctttcccctacaggatca
ggtaagacagttgcattcttaatgcctttgttagaacgattagaccctgctatcagagga
gtacaggcagttatactagtgccgactagagaacttgctctacagatagagactgtattt
aagaagatgggaacaccttttaagattaactcttgttatggagggcattctactaaaaca
gaaataaagaatttcagcacaccaccagcagtattagtaggtacaccaggtcgagtggct
tttcacgtagaggagttttcttttaacacagagaccgtgactagctatgtagtagatgag
ttcgataaagctctagagatgggcttccagactgatatggattatatcatcaattcgttt
gataatatctctttcagaatgcttacatcagctactgctttgaagaagattcctgagttt
acaggtatagtagatcctgagcgtattcatttcttaaagaaaacagaggtaatgccagac
ctaacttttagtcaagttatttctactgcagaagagaagttagagactgtaattaagctt
ataggtaagataggtaaggacactattcttatcttctgtaatcaccgtgatgccgtagct
cgtattagtgagacattgactaaaaaaggagttgctaacagtgcttttcacggaggaatg
ttacaagaagatagagagcgtgctatcatgaagtttagaaataagagtgcacatattctt
atcgccacagacttagctgctagaggacttgatatccctgagattggtcatgtgattcac
taccagataccacagaaagaagatgcttttattcataggaatggacgtactgcacgtatg
aaggcatcgggtaaagcttatgtgatgattactaaagaagagaatatcgagtttatcaac
cctgatatgccgatagaggaccttgatggaagctatactatcgacaataaaacagatttt
aaaacaatctatatcagtgctggtaaaaaagataaagtcaacaaaggggatatcgttggt
tatctaatcaagacaggaggcttgaccaaagaggatataggcgtgatagatgtacgtgat
acacaggctttcgtagcagtgaatacaaagaaagttaaggctctactgactgcactagta
gatacaagacttaaaaataagagagtgaagatagagatagctagagactaa
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