Myroides sp. A21: MYRA21_0517
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Entry
MYRA21_0517 CDS
T03521
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
myr
Myroides sp. A21
Brite
KEGG Orthology (KO) [BR:
myr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
myr03016
]
MYRA21_0517
Enzymes [BR:
myr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MYRA21_0517
Transfer RNA biogenesis [BR:
myr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MYRA21_0517
Prokaryotic type
tRNA splicing ligases
MYRA21_0517
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
HeH
Motif
Other DBs
NCBI-ProteinID:
AJA67727
LinkDB
All DBs
Position
complement(534364..535794)
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AA seq
476 aa
AA seq
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MKDNTPINGNDLIVLGYPQTELLGIALKANKKRTGYTKVEMLAHYKAVLTNAEDYLNDKV
FGKLATAIIEGVGQRVEEEVIPLREEAVGYTVYGADHIEDGAIKQMQTAVKLPVAVAGAL
MPDAHQGYGLPIGGVLATENAVIPYGVGVDIGCRMALSIFDIKGVEFYGMEDLLKEQLVK
HTKFGAGHGFQGQYKAQHDVLDRGEFNLNPFIKNLQDKAWEQLGSSGGGNHFVEWGLMEF
MERDEVLNIDKGTYLALLTHSGSRGMGATIAGRYTQIAKDICKLPYEAKNLAYLDLNSEA
GQEYWAMMNLAGDYASACHEVIHDKLTKAIGAEVLAKVENHHNFAWKEMYQGREVIVHRK
GATPASKGVMGIIPGSMTAPGFLVRGKGEEEALNSASHGAGRQMSRTQAIKTLKAADIKA
VLSDHGVELIGAGKDEAPMAYKDIHQVMAAQGELVDVVAMFTPKIVRMADDGSKED
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgaaagataatacaccgattaatggaaatgatttaattgttttaggatacccacaaaca
gagttattgggtattgctctaaaagcgaataagaaaagaacaggttatacgaaggtggag
atgttagcacattataaagcagtgcttactaatgcagaagattacttaaacgataaggta
tttgggaagttggctaccgctattatagaaggcgtgggacaacgtgtagaagaagaggtt
attccactgagagaggaggctgtagggtatacagtatacggtgctgatcatatagaagac
ggagcgattaagcagatgcaaactgcggtaaagctacctgtggctgtagcaggtgcgtta
atgcctgatgcacatcaaggatatggattacctatcggaggagtattagctactgagaat
gctgtgataccttatggtgtaggagtagatattgggtgtagaatggcgttgtctattttt
gatattaaaggtgtggagttctacggtatggaagacttattgaaagaacagttggttaag
catactaagtttggagcagggcatggattccaaggacaatataaagcacaacatgatgtc
ttagatagaggagagtttaatctaaacccatttattaagaacttacaagataaagcttgg
gaacaactggggtcttcaggtggaggtaatcactttgtagaatggggattgatggagttc
atggagagagatgaggtattgaatatagataaagggacttacttagctttactaacacat
tcaggatctcgtggaatgggagcgactatagcaggtagatatacgcaaatcgctaaagat
atctgtaagttaccttatgaagcaaaaaacttggcttaccttgatctaaactcagaagca
ggacaagagtattgggcgatgatgaacttggcaggggattatgcttcagcttgtcatgag
gtcattcatgataaactaactaaagcaataggtgctgaggtattagccaaagtggagaat
caccataattttgcgtggaaggagatgtaccaaggtagagaggttattgtacatcgtaaa
ggagctactcctgcgagtaaaggagtgatggggattataccaggctctatgactgcgcca
ggattcttagtgagaggtaaaggagaagaggaagctttaaactctgcttcacatggagca
ggacgtcagatgagcagaacacaagctatcaagactctgaaagcagctgatataaaagca
gtattgtcagatcatggtgtagagttaataggagcaggtaaagatgaagctcctatggct
tataaagatattcatcaggtgatggctgcacagggagagttagtcgatgtagtagcgatg
tttacgcctaagattgtccgaatggctgatgatgggagtaaagaggattaa
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